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NKAPP1 NFKB activating protein pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 158801, updated on 19-Jul-2022

Summary

Official Symbol
NKAPP1provided by HGNC
Official Full Name
NFKB activating protein pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:26706
See related
Ensembl:ENSG00000233382 AllianceGenome:HGNC:26706
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXorf42
Expression
Low expression observed in reference dataset See more
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Genomic context

See NKAPP1 in Genome Data Viewer
Location:
Xq24
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (120236452..120245267, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (118611509..118620324, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (119370305..119379122, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene SFR1 pseudogene 1 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 30 Neighboring gene transmembrane protein 255A Neighboring gene zinc finger and BTB domain containing 33 Neighboring gene prefoldin subunit 4-like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027131.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC022359, CK905715, DB004517
    Related
    ENST00000452254.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    120236452..120245267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    118611509..118620324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173522.1: Suppressed sequence

    Description
    NM_173522.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.