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CSAG1 chondrosarcoma associated gene 1 [ Homo sapiens (human) ]

Gene ID: 158511, updated on 23-Nov-2021

Summary

Official Symbol
CSAG1provided by HGNC
Official Full Name
chondrosarcoma associated gene 1provided by HGNC
Primary source
HGNC:HGNC:24294
See related
Ensembl:ENSG00000198930 MIM:300944
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CSAGE; CT24.1
Summary
This gene encodes a member of a family of tumor antigens. The protein is expressed in chondrosarcomas, but may also be expressed in normal tissues such as testis. Alternative splicing of this gene results in two transcript variants encoding the same protein. [provided by RefSeq, Jul 2008]
Expression
Low expression observed in reference dataset See more
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Genomic context

See CSAG1 in Genome Data Viewer
Location:
Xq28
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (152727484..152733721, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (151903242..151909518)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene CSAG family member 2 Neighboring gene MAGE family member A2B Neighboring gene MAGE family member A12 Neighboring gene CSAG family member 4 (pseudogene) Neighboring gene MAGE family member A2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
putative chondrosarcoma-associated gene 1 protein
Names
cancer/testis antigen 24.1
cancer/testis antigen CSAGE
cancer/testis antigen family 24, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_013228.2 RefSeqGene

    Range
    5014..11251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001102576.3NP_001096046.2  putative chondrosarcoma-associated gene 1 protein

    See identical proteins and their annotated locations for NP_001096046.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (c) differs in the 5' UTR compared to variant a. Variants a and c both encode the same protein.
    Source sequence(s)
    AF195880, BC059947
    Consensus CDS
    CCDS76047.1
    UniProtKB/Swiss-Prot
    Q6PB30
    UniProtKB/TrEMBL
    A0A024RC18
    Related
    ENSP00000396520.2, ENST00000452779.3
  2. NM_153478.3NP_705611.2  putative chondrosarcoma-associated gene 1 protein

    See identical proteins and their annotated locations for NP_705611.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (a) represents the longer transcript. Variants a and c both encode the same protein.
    Source sequence(s)
    AF195880, AF268419, BC059947
    Consensus CDS
    CCDS76047.1
    UniProtKB/Swiss-Prot
    Q6PB30
    UniProtKB/TrEMBL
    A0A024RC18
    Related
    ENSP00000359310.3, ENST00000370287.7

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    152727484..152733721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153479.1: Suppressed sequence

    Description
    NM_153479.1: This RefSeq was permanently suppressed because it contains the wrong CDS.
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