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ERICH1 glutamate rich 1 [ Homo sapiens (human) ]

Gene ID: 157697, updated on 4-Dec-2022

Summary

Official Symbol
ERICH1provided by HGNC
Official Full Name
glutamate rich 1provided by HGNC
Primary source
HGNC:HGNC:27234
See related
Ensembl:ENSG00000104714 AllianceGenome:HGNC:27234
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSPC319
Expression
Ubiquitous expression in lymph node (RPKM 1.3), skin (RPKM 1.3) and 25 other tissues See more
Orthologs
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Genomic context

See ERICH1 in Genome Data Viewer
Location:
8p23.3
Exon count:
22
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (614746..731224, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (412071..522796, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (564746..681224, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene F-box protein 25 Neighboring gene uncharacterized LOC124902055 Neighboring gene testis development related protein Neighboring gene uncharacterized LOC124902053 Neighboring gene uncharacterized LOC124902054 Neighboring gene uncharacterized LOC124902044 Neighboring gene uncharacterized LOC401442 Neighboring gene DLG associated protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ00290

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303100.2NP_001290029.1  glutamate-rich protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001290029.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC090691, AK125470, AK297476, BU540397, CA433484, CN353744
    UniProtKB/TrEMBL
    B4DMI5
    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  2. NM_207332.3NP_997215.1  glutamate-rich protein 1 isoform 1

    See identical proteins and their annotated locations for NP_997215.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    BC046243, CN353744
    Consensus CDS
    CCDS5955.1
    UniProtKB/Swiss-Prot
    Q86X53, Q9P063
    Related
    ENSP00000262109.7, ENST00000262109.8
    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

RNA

  1. NR_156467.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC046243, BU540397, CN353744

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    614746..731224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047421403.1XP_047277359.1  glutamate-rich protein 1 isoform X13

  2. XM_047421399.1XP_047277355.1  glutamate-rich protein 1 isoform X9

  3. XM_047421395.1XP_047277351.1  glutamate-rich protein 1 isoform X4

  4. XM_006716234.5XP_006716297.2  glutamate-rich protein 1 isoform X2

    Conserved Domains (2) summary
    pfam05285
    Location:271337
    SDA1; SDA1
    cl22451
    Location:193313
    ASF1_hist_chap; ASF1 like histone chaperone
  5. XM_047421393.1XP_047277349.1  glutamate-rich protein 1 isoform X1

  6. XM_047421396.1XP_047277352.1  glutamate-rich protein 1 isoform X5

  7. XM_047421394.1XP_047277350.1  glutamate-rich protein 1 isoform X3

  8. XM_047421398.1XP_047277354.1  glutamate-rich protein 1 isoform X8

  9. XM_047421404.1XP_047277360.1  glutamate-rich protein 1 isoform X14

  10. XM_047421400.1XP_047277356.1  glutamate-rich protein 1 isoform X10

  11. XM_047421402.1XP_047277358.1  glutamate-rich protein 1 isoform X12

  12. XM_047421397.1XP_047277353.1  glutamate-rich protein 1 isoform X6

  13. XM_047421401.1XP_047277357.1  glutamate-rich protein 1 isoform X11

  14. XM_011534731.4XP_011533033.1  glutamate-rich protein 1 isoform X7

    Conserved Domains (1) summary
    pfam05285
    Location:271332
    SDA1; SDA1
  15. XM_017013133.3XP_016868622.1  glutamate-rich protein 1 isoform X15

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

RNA

  1. XR_007060715.1 RNA Sequence

  2. XR_007060714.1 RNA Sequence

  3. XR_007060710.1 RNA Sequence

  4. XR_007060711.1 RNA Sequence

  5. XR_007060707.1 RNA Sequence

  6. XR_007060706.1 RNA Sequence

  7. XR_007060709.1 RNA Sequence

  8. XR_007060708.1 RNA Sequence

  9. XR_007060713.1 RNA Sequence

  10. XR_007060716.1 RNA Sequence

  11. XR_007060712.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187572.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    4950..12826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068638.1 RNA Sequence

  2. XR_951758.3 RNA Sequence

  3. XR_007068636.1 RNA Sequence

  4. XR_007068637.1 RNA Sequence

  5. XR_007068635.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    412071..522796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)