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ERICH1 glutamate rich 1 [ Homo sapiens (human) ]

Gene ID: 157697, updated on 23-Nov-2021

Summary

Official Symbol
ERICH1provided by HGNC
Official Full Name
glutamate rich 1provided by HGNC
Primary source
HGNC:HGNC:27234
See related
Ensembl:ENSG00000104714
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSPC319
Expression
Ubiquitous expression in lymph node (RPKM 1.3), skin (RPKM 1.3) and 25 other tissues See more
Orthologs
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Genomic context

See ERICH1 in Genome Data Viewer
Location:
8p23.3
Exon count:
23
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (614742..731224, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (564746..681224, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene F-box protein 25 Neighboring gene testis development related protein Neighboring gene uncharacterized LOC401442 Neighboring gene DLG associated protein 2 Neighboring gene uncharacterized LOC105377777

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ00290

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303100.2NP_001290029.1  glutamate-rich protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001290029.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC090691, AK125470, AK297476, BU540397, CA433484, CN353744
    UniProtKB/TrEMBL
    B4DMI5
    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  2. NM_207332.3NP_997215.1  glutamate-rich protein 1 isoform 1

    See identical proteins and their annotated locations for NP_997215.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    BC046243, CN353744
    Consensus CDS
    CCDS5955.1
    UniProtKB/Swiss-Prot
    Q86X53
    Related
    ENSP00000262109.7, ENST00000262109.8
    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

RNA

  1. NR_156467.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC046243, BU540397, CN353744

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    614742..731224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011534735.3XP_011533037.1  glutamate-rich protein 1 isoform X15

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  2. XM_017013124.2XP_016868613.1  glutamate-rich protein 1 isoform X10

  3. XM_017013126.2XP_016868615.1  glutamate-rich protein 1 isoform X13

  4. XM_024447076.1XP_024302844.1  glutamate-rich protein 1 isoform X14

    Conserved Domains (1) summary
    cl26761
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  5. XM_024447077.1XP_024302845.1  glutamate-rich protein 1 isoform X17

    Conserved Domains (1) summary
    cl26761
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  6. XM_017013116.2XP_016868605.1  glutamate-rich protein 1 isoform X2

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  7. XM_017013115.2XP_016868604.1  glutamate-rich protein 1 isoform X2

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  8. XM_017013120.2XP_016868609.1  glutamate-rich protein 1 isoform X7

  9. XM_006716234.4XP_006716297.2  glutamate-rich protein 1 isoform X4

    Conserved Domains (2) summary
    pfam05285
    Location:271337
    SDA1; SDA1
    cl22451
    Location:193313
    ASF1_hist_chap; ASF1 like histone chaperone
  10. XM_017013117.2XP_016868606.1  glutamate-rich protein 1 isoform X3

  11. XM_017013114.2XP_016868603.1  glutamate-rich protein 1 isoform X1

  12. XM_017013118.2XP_016868607.1  glutamate-rich protein 1 isoform X5

  13. XM_017013134.2XP_016868623.1  glutamate-rich protein 1 isoform X20

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  14. XM_017013121.2XP_016868610.1  glutamate-rich protein 1 isoform X8

  15. XM_017013119.2XP_016868608.1  glutamate-rich protein 1 isoform X6

  16. XM_017013125.2XP_016868614.1  glutamate-rich protein 1 isoform X12

  17. XM_017013122.2XP_016868611.1  glutamate-rich protein 1 isoform X8

  18. XM_011534731.3XP_011533033.1  glutamate-rich protein 1 isoform X11

    Conserved Domains (1) summary
    pfam05285
    Location:271332
    SDA1; SDA1
  19. XM_017013123.2XP_016868612.1  glutamate-rich protein 1 isoform X9

  20. XM_011534736.3XP_011533038.1  glutamate-rich protein 1 isoform X16

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  21. XM_017013129.2XP_016868618.1  glutamate-rich protein 1 isoform X16

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  22. XM_017013133.2XP_016868622.1  glutamate-rich protein 1 isoform X19

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  23. XM_017013131.2XP_016868620.1  glutamate-rich protein 1 isoform X16

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  24. XM_017013130.2XP_016868619.1  glutamate-rich protein 1 isoform X16

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  25. XM_017013128.2XP_016868617.1  glutamate-rich protein 1 isoform X16

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  26. XM_011534737.3XP_011533039.1  glutamate-rich protein 1 isoform X18

    See identical proteins and their annotated locations for XP_011533039.1

    Conserved Domains (1) summary
    COG5271
    Location:193330
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  27. XM_017013137.1XP_016868626.1  glutamate-rich protein 1 isoform X21

  28. XM_017013139.1XP_016868628.1  glutamate-rich protein 1 isoform X21

  29. XM_017013138.1XP_016868627.1  glutamate-rich protein 1 isoform X21

  30. XM_017013135.1XP_016868624.1  glutamate-rich protein 1 isoform X21

  31. XM_017013136.1XP_016868625.1  glutamate-rich protein 1 isoform X21

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187572.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    4950..12819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001756306.1 RNA Sequence

  2. XR_001756305.1 RNA Sequence

  3. XR_001756304.1 RNA Sequence

  4. XR_951762.2 RNA Sequence

  5. XR_951761.2 RNA Sequence

  6. XR_951758.2 RNA Sequence

  7. XR_951759.2 RNA Sequence

  8. XR_001756303.1 RNA Sequence

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