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Elavl1 ELAV like RNA binding protein 1 [ Mus musculus (house mouse) ]

Gene ID: 15568, updated on 21-Feb-2024

Summary

Official Symbol
Elavl1provided by MGI
Official Full Name
ELAV like RNA binding protein 1provided by MGI
Primary source
MGI:MGI:1100851
See related
Ensembl:ENSMUSG00000040028 AllianceGenome:MGI:1100851
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
HUR; Hua; 2410055N02Rik
Summary
Enables long noncoding RNA binding activity and mRNA 3'-UTR AU-rich region binding activity. Involved in posttranscriptional regulation of gene expression; protein import into nucleus; and regulation of stem cell population maintenance. Acts upstream of or within positive regulation of translation. Located in several cellular components, including cytoplasmic stress granule; glutamatergic synapse; and postsynapse. Part of ribonucleoprotein complex. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; genitourinary system; and sensory organ. Orthologous to human ELAVL1 (ELAV like RNA binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 16.0), whole brain E14.5 (RPKM 14.2) and 28 other tissues See more
Orthologs
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Genomic context

See Elavl1 in Genome Data Viewer
Location:
8 A1.1; 8 2.0 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (4334781..4375104, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (4284781..4325140, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cortexin 1 Neighboring gene translocase of inner mitochondrial membrane 44 Neighboring gene STARR-positive B cell enhancer ABC_E4988 Neighboring gene predicted gene, 50600 Neighboring gene C-C motif chemokine ligand 25 Neighboring gene predicted gene 7434

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (10)  1 citation
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding ISO
Inferred from Sequence Orthology
more info
PubMed 
enables double-stranded RNA binding ISO
Inferred from Sequence Orthology
more info
PubMed 
enables lncRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables lncRNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables mRNA 3'-UTR AU-rich region binding IDA
Inferred from Direct Assay
more info
PubMed 
enables mRNA 3'-UTR AU-rich region binding ISO
Inferred from Sequence Orthology
more info
PubMed 
enables mRNA 3'-UTR binding IDA
Inferred from Direct Assay
more info
PubMed 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables mRNA binding ISO
Inferred from Sequence Orthology
more info
 
enables miRNA binding ISO
Inferred from Sequence Orthology
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
enables protein kinase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in 3'-UTR-mediated mRNA stabilization IDA
Inferred from Direct Assay
more info
PubMed 
involved_in 3'-UTR-mediated mRNA stabilization ISO
Inferred from Sequence Orthology
more info
 
involved_in mRNA destabilization ISO
Inferred from Sequence Orthology
more info
 
involved_in mRNA stabilization IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within mRNA stabilization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in mRNA stabilization IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within mRNA stabilization ISO
Inferred from Sequence Orthology
more info
PubMed 
involved_in mRNA stabilization ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of miRNA-mediated gene silencing ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of superoxide anion generation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within positive regulation of translation IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within positive regulation of translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of translation ISO
Inferred from Sequence Orthology
more info
PubMed 
involved_in post-transcriptional gene silencing IDA
Inferred from Direct Assay
more info
PubMed 
involved_in protein homooligomerization ISO
Inferred from Sequence Orthology
more info
 
involved_in protein import into nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of stem cell population maintenance IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within regulation of translation ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasmic vesicle IPI
Inferred from Physical Interaction
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in glutamatergic synapse IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in glutamatergic synapse IEP
Inferred from Expression Pattern
more info
PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
is_active_in postsynapse IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in postsynapse IEP
Inferred from Expression Pattern
more info
PubMed 
part_of ribonucleoprotein complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in sarcoplasm IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
ELAV-like protein 1
Names
ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
HU-antigen A
elav-like generic protein
hu-antigen R
melG

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010485.3NP_034615.2  ELAV-like protein 1

    See identical proteins and their annotated locations for NP_034615.2

    Status: VALIDATED

    Source sequence(s)
    AC155164, AK028769, AK080365, BB305633, BY775007
    Consensus CDS
    CCDS22084.1
    UniProtKB/Swiss-Prot
    P70372, Q60745, Q78QY3
    UniProtKB/TrEMBL
    Q3UFF9, Q8BM84, Q8BW03
    Related
    ENSMUSP00000096549.5, ENSMUST00000098950.6
    Conserved Domains (1) summary
    TIGR01661
    Location:19326
    ELAV_HUD_SF; ELAV/HuD family splicing factor

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    4334781..4375104 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508698.5XP_006508761.1  ELAV-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006508761.1

    UniProtKB/Swiss-Prot
    P70372, Q60745, Q78QY3
    UniProtKB/TrEMBL
    Q3UFF9, Q8BM84, Q8BW03
    Conserved Domains (1) summary
    TIGR01661
    Location:19326
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  2. XM_030243302.2XP_030099162.1  ELAV-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P70372, Q60745, Q78QY3
    UniProtKB/TrEMBL
    Q3UFF9, Q8BM84, Q8BW03
    Conserved Domains (1) summary
    TIGR01661
    Location:19326
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  3. XM_030243301.2XP_030099161.1  ELAV-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P70372, Q60745, Q78QY3
    UniProtKB/TrEMBL
    Q3UFF9, Q8BM84, Q8BW03
    Related
    ENSMUSP00000146866.2, ENSMUST00000209010.2
    Conserved Domains (1) summary
    TIGR01661
    Location:19326
    ELAV_HUD_SF; ELAV/HuD family splicing factor