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Htr5b 5-hydroxytryptamine (serotonin) receptor 5B [ Mus musculus (house mouse) ]

Gene ID: 15564, updated on 12-Mar-2017
Official Symbol
Htr5bprovided by MGI
Official Full Name
5-hydroxytryptamine (serotonin) receptor 5Bprovided by MGI
Primary source
MGI:MGI:96284
See related
Ensembl:ENSMUSG00000050534 Vega:OTTMUSG00000021025
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5-Ht5b
Location:
1 E2.3; 1 52.98 cM
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (121509758..121529312, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (123406335..123425042, complement)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35243 Neighboring gene coiled-coil domain containing 93 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 10 pseudogene

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Markers

Homology

Clone Names

  • MGC141198

Gene Ontology Provided by MGI

Function Evidence Code Pubs
G-protein coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
G-protein coupled serotonin receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
G-protein coupled serotonin receptor activity ISO
Inferred from Sequence Orthology
more info
 
drug binding ISO
Inferred from Sequence Orthology
more info
 
neurotransmitter receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
serotonin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
serotonin binding ISO
Inferred from Sequence Orthology
more info
 
signal transducer activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
G-protein coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
adenylate cyclase-inhibiting serotonin receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
serotonin receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IEA
Inferred from Electronic Annotation
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
5-hydroxytryptamine receptor 5B
Names
5-HT-5B
protein-tyrosine-phosphatase (EC 3.1.3.48) Ly-5 precursor (B-cell variant)
serotonin receptor 5B

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010483.3NP_034613.2  5-hydroxytryptamine receptor 5B

    See identical proteins and their annotated locations for NP_034613.2

    Status: VALIDATED

    Source sequence(s)
    AC111011
    Consensus CDS
    CCDS15239.1
    UniProtKB/TrEMBL
    G3X9C6
    Related
    ENSMUSP00000057212, OTTMUSP00000023087, ENSMUST00000055884, OTTMUST00000049715
    Conserved Domains (1) summary
    pfam00001
    Location:69351
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

    Range
    121509758..121529312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317180.1XP_017172669.1  5-hydroxytryptamine receptor 5B isoform X1

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