Format

Send to:

Choose Destination

Htr1f 5-hydroxytryptamine (serotonin) receptor 1F [ Mus musculus (house mouse) ]

Gene ID: 15557, updated on 18-Sep-2018

Summary

Official Symbol
Htr1fprovided by MGI
Official Full Name
5-hydroxytryptamine (serotonin) receptor 1Fprovided by MGI
Primary source
MGI:MGI:99842
See related
Ensembl:ENSMUSG00000050783
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Htr1eb
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See Htr1f in Genome Data Viewer
Location:
16 C1.3; 16 37.1 cM
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (64924729..65105784, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (64924555..65105610, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene actin-like 8 Neighboring gene predicted gene, 34033 Neighboring gene geminin pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3) 

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
G protein-coupled serotonin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
G protein-coupled serotonin receptor activity ISO
Inferred from Sequence Orthology
more info
 
G protein-coupled serotonin receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
neurotransmitter receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
serotonin binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
chemical synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
dendrite IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
5-hydroxytryptamine receptor 1F
Names
5-HT-1E-beta
5-HT-1F
5-HT1F
5-hydroxytryptamine (serotonin) receptor 1E beta
serotonin receptor 1F

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008310.3NP_032336.1  5-hydroxytryptamine receptor 1F

    See identical proteins and their annotated locations for NP_032336.1

    Status: VALIDATED

    Source sequence(s)
    AK045364
    Consensus CDS
    CCDS28267.1
    UniProtKB/Swiss-Prot
    Q02284
    UniProtKB/TrEMBL
    Q543V2
    Related
    ENSMUSP00000063136.4, ENSMUST00000063076.5
    Conserved Domains (2) summary
    pfam00001
    Location:41347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

    Range
    64924729..65105784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center