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NSUN5P1 NSUN5 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 155400, updated on 4-Jun-2020

Summary

Official Symbol
NSUN5P1provided by HGNC
Official Full Name
NSUN5 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:19146
See related
Ensembl:ENSG00000223705
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NSUN5B; WBSCR20B
Summary
This locus represents a transcribed pseudogene of a nearby locus on chromosome 7, which encodes a putative methyltransferase. There is also a third closely related pseudogene locus in this region. Alternative splicing results in multiple transcript variants of this gene. [provided by RefSeq, Jul 2013]
Expression
Ubiquitous expression in duodenum (RPKM 21.4), lymph node (RPKM 19.5) and 25 other tissues See more

Genomic context

See NSUN5P1 in Genome Data Viewer
Location:
7q11.23
Exon count:
11
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (75410322..75416792)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (75039605..75046071)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 6 pseudogene Neighboring gene tripartite motif containing 73 Neighboring gene POM121 transmembrane nucleoporin C Neighboring gene 7q11.23 proximal recombination region Neighboring gene speedy/RINGO cell cycle regulator family member E5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • NOL1/NOP2/Sun domain family, member 5B
  • NOP2/Sun RNA methyltransferase family member 5 pseudogene 1
  • NOP2/Sun domain family, member 5 pseudogene 1
  • NOP2/Sun domain family, member 5B, pseudogene
  • Williams Beuren syndrome chromosome region 20B
  • Williams-Beuren Syndrome critical region protein 20 copy B

Clone Names

  • FLJ99347, MGC129801

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
RNA methylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
methylation IEA
Inferred from Electronic Annotation
more info
 
rRNA base methylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033322.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate internal exon and lacks two alternate internal segments, resulting in a shorter transcript, compared to variant 4.
    Source sequence(s)
    AC211429, AF416610, AI265798, AW575486, BC044928, BX400367
    Related
    ENST00000421140.6
  2. NR_104013.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) represents the longer transcript.
    Source sequence(s)
    AC211429, AI265798, AK094312, BC044928, BX400367
    Related
    ENST00000457988.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    75410322..75416792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039575.1: Suppressed sequence

    Description
    NM_001039575.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  2. NM_001039576.1: Suppressed sequence

    Description
    NM_001039576.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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