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CLEC2L C-type lectin domain family 2 member L [ Homo sapiens (human) ]

Gene ID: 154790, updated on 11-Jun-2021

Summary

Official Symbol
CLEC2Lprovided by HGNC
Official Full Name
C-type lectin domain family 2 member Lprovided by HGNC
Primary source
HGNC:HGNC:21969
See related
Ensembl:ENSG00000236279
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 5.6), endometrium (RPKM 0.5) and 1 other tissue See more
Orthologs
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Genomic context

See CLEC2L in Genome Data Viewer
Location:
7q34
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (139523685..139544991)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (139208431..139229731)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 911, pseudogene Neighboring gene killer cell lectin like receptor G2 Neighboring gene ST13, Hsp70 interacting protein pseudogene 17 Neighboring gene ERH pseudogene 1 Neighboring gene uncharacterized LOC105375530 Neighboring gene homeodomain interacting protein kinase 2 Neighboring gene Sharpr-MPRA regulatory region 3006 Neighboring gene thromboxane A synthase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ32986

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
C-type lectin domain family 2 member L

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080511.4NP_001073980.2  C-type lectin domain family 2 member L isoform 1

    See identical proteins and their annotated locations for NP_001073980.2

    Status: VALIDATED

    Source sequence(s)
    AC005531, HY072821
    Consensus CDS
    CCDS47724.1
    UniProtKB/Swiss-Prot
    P0C7M8
    Related
    ENSP00000390661.2, ENST00000422142.7
    Conserved Domains (1) summary
    cd03593
    Location:100210
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
  2. NM_001353368.2NP_001340297.1  C-type lectin domain family 2 member L isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC005531
    Conserved Domains (1) summary
    cd03593
    Location:75185
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    139523685..139544991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017011770.2XP_016867259.1  C-type lectin domain family 2 member L isoform X1

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