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CCDC167 coiled-coil domain containing 167 [ Homo sapiens (human) ]

Gene ID: 154467, updated on 22-Sep-2022

Summary

Official Symbol
CCDC167provided by HGNC
Official Full Name
coiled-coil domain containing 167provided by HGNC
Primary source
HGNC:HGNC:21239
See related
Ensembl:ENSG00000198937 AllianceGenome:HGNC:21239
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSPC265; C6orf129
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in lymph node (RPKM 11.9), testis (RPKM 9.5) and 24 other tissues See more
Orthologs
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Genomic context

See CCDC167 in Genome Data Viewer
Location:
6p21.2
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (37482938..37499893, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (37306479..37323454, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (37450714..37467669, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 7630 Neighboring gene ring finger protein 8 Neighboring gene uncharacterized LOC107986531 Neighboring gene cap methyltransferase 1 Neighboring gene long intergenic non-protein coding RNA 2520 Neighboring gene uncharacterized LOC124901312

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.
EBI GWAS Catalog
Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC131656

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 167
Names
transmembrane and coiled-coil domain-containing protein C6orf129

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_138493.3NP_612502.1  coiled-coil domain-containing protein 167

    See identical proteins and their annotated locations for NP_612502.1

    Status: VALIDATED

    Source sequence(s)
    BC108655
    Consensus CDS
    CCDS34441.1
    UniProtKB/Swiss-Prot
    Q9BTQ9, Q9P0B6
    Related
    ENSP00000362507.3, ENST00000373408.4
    Conserved Domains (1) summary
    pfam15188
    Location:1192
    CCDC-167; Coiled-coil domain-containing protein 167

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    37482938..37499893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    37306479..37323454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)