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CCDC167 coiled-coil domain containing 167 [ Homo sapiens (human) ]

Gene ID: 154467, updated on 7-Jun-2020

Summary

Official Symbol
CCDC167provided by HGNC
Official Full Name
coiled-coil domain containing 167provided by HGNC
Primary source
HGNC:HGNC:21239
See related
Ensembl:ENSG00000198937
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSPC265; C6orf129
Expression
Ubiquitous expression in lymph node (RPKM 11.9), testis (RPKM 9.5) and 24 other tissues See more
Orthologs

Genomic context

See CCDC167 in Genome Data Viewer
Location:
6p21.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (37482938..37499893, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (37450696..37467700, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 273, pseudogene Neighboring gene ring finger protein 8 Neighboring gene translation initiation factor IF-2-like Neighboring gene cap methyltransferase 1 Neighboring gene long intergenic non-protein coding RNA 2520 Neighboring gene microRNA 4462

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.
NHGRI GWA Catalog
Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC131656

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 167
Names
transmembrane and coiled-coil domain-containing protein C6orf129

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_138493.3NP_612502.1  coiled-coil domain-containing protein 167

    See identical proteins and their annotated locations for NP_612502.1

    Status: VALIDATED

    Source sequence(s)
    BC108655
    Consensus CDS
    CCDS34441.1
    UniProtKB/Swiss-Prot
    Q9P0B6
    Related
    ENSP00000362507.3, ENST00000373408.4
    Conserved Domains (1) summary
    pfam15188
    Location:1192
    CCDC-167; Coiled-coil domain-containing protein 167

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    37482938..37499893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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