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Hoxd10 homeobox D10 [ Mus musculus (house mouse) ]

Gene ID: 15430, updated on 5-Jun-2018
Official Symbol
Hoxd10provided by MGI
Official Full Name
homeobox D10provided by MGI
Primary source
MGI:MGI:96202
See related
Ensembl:ENSMUSG00000050368 Vega:OTTMUSG00000016554
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hox-4.5; Hox-5.3; AI385591; AI874987
Expression
Biased expression in limb E14.5 (RPKM 13.3), subcutaneous fat pad adult (RPKM 8.3) and 6 other tissues See more
Orthologs
See Hoxd10 in Genome Data Viewer
Location:
2 C3; 2 44.13 cM
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (74684273..74695106)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (74530005..74533159)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene homeobox D13 Neighboring gene homeobox D12 Neighboring gene homeobox D11 Neighboring gene homeobox D9 Neighboring gene predicted gene, 38462 Neighboring gene homeobox D8

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • MicroRNAs in cancer, organism-specific biosystem (from KEGG)
    MicroRNAs in cancer, organism-specific biosystemMicroRNA (miRNA) is a cluster of small non-encoding RNA molecules of 21 - 23 nucleotides in length, which controls gene expression post-transcriptionally either via the degradation of target mRNAs or...
  • MicroRNAs in cancer, conserved biosystem (from KEGG)
    MicroRNAs in cancer, conserved biosystemMicroRNA (miRNA) is a cluster of small non-encoding RNA molecules of 21 - 23 nucleotides in length, which controls gene expression post-transcriptionally either via the degradation of target mRNAs or...
  • Proteoglycans in cancer, organism-specific biosystem (from KEGG)
    Proteoglycans in cancer, organism-specific biosystemMany proteoglycans (PGs) in the tumor microenvironment have been shown to be key macromolecules that contribute to biology of various types of cancer including proliferation, adhesion, angiogenesis a...
  • Proteoglycans in cancer, conserved biosystem (from KEGG)
    Proteoglycans in cancer, conserved biosystemMany proteoglycans (PGs) in the tumor microenvironment have been shown to be key macromolecules that contribute to biology of various types of cancer including proliferation, adhesion, angiogenesis a...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
adult locomotory behavior IGI
Inferred from Genetic Interaction
more info
PubMed 
anterior/posterior pattern specification IGI
Inferred from Genetic Interaction
more info
PubMed 
embryonic limb morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
embryonic skeletal system morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
forelimb morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
hindlimb morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
neuromuscular process IGI
Inferred from Genetic Interaction
more info
PubMed 
peripheral nervous system neuron development IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
proximal/distal pattern formation IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of gene expression IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
single fertilization IGI
Inferred from Genetic Interaction
more info
PubMed 
skeletal muscle tissue development IGI
Inferred from Genetic Interaction
more info
PubMed 
skeletal system development IGI
Inferred from Genetic Interaction
more info
PubMed 
skeletal system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
spinal cord motor neuron cell fate specification IGI
Inferred from Genetic Interaction
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasmic ribonucleoprotein granule ISO
Inferred from Sequence Orthology
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
homeobox protein Hox-D10
Names
homeo box D10
homeobox protein Hox-4.5
homeobox protein Hox-5.3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013554.5NP_038582.2  homeobox protein Hox-D10

    See identical proteins and their annotated locations for NP_038582.2

    Status: VALIDATED

    Source sequence(s)
    AK134330, AL928644
    Consensus CDS
    CCDS16141.1
    UniProtKB/Swiss-Prot
    P28359
    Related
    ENSMUSP00000062412.3, OTTMUSP00000017845, ENSMUST00000061745.4, OTTMUST00000040007
    Conserved Domains (1) summary
    pfam00046
    Location:269322
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    74684273..74695106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006498789.3XP_006498852.1  homeobox protein Hox-D10 isoform X1

    Conserved Domains (1) summary
    pfam00046
    Location:339392
    Homeobox; Homeobox domain
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