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Hoxa6 homeobox A6 [ Mus musculus (house mouse) ]

Gene ID: 15403, updated on 8-Jul-2018
Official Symbol
Hoxa6provided by MGI
Official Full Name
homeobox A6provided by MGI
Primary source
MGI:MGI:96178
See related
Ensembl:ENSMUSG00000043219 Vega:OTTMUSG00000018882
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hox-1.2
Expression
Biased expression in colon adult (RPKM 5.1), ovary adult (RPKM 3.7) and 11 other tissues See more
Orthologs
See Hoxa6 in Genome Data Viewer
Location:
6 B3; 6 25.4 cM
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (52206365..52208624, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (52156364..52158623, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene homeobox A3 Neighboring gene homeobox A4 Neighboring gene Hoxa cluster antisense RNA 3 Neighboring gene homeobox A5 Neighboring gene mistral long non-coding RNA Neighboring gene homeobox A7

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II distal enhancer sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
anterior/posterior pattern specification IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
anterior/posterior pattern specification IGI
Inferred from Genetic Interaction
more info
PubMed 
anterior/posterior pattern specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic skeletal system development IGI
Inferred from Genetic Interaction
more info
PubMed 
embryonic skeletal system morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
homeobox protein Hox-A6
Names
homeo box A6
homeobox protein Hox-1.2
homeobox protein M5-4

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010454.2NP_034584.1  homeobox protein Hox-A6

    See identical proteins and their annotated locations for NP_034584.1

    Status: VALIDATED

    Source sequence(s)
    BC119105, BQ558488
    Consensus CDS
    CCDS20144.1
    UniProtKB/Swiss-Prot
    P09092
    UniProtKB/TrEMBL
    Q0VEU7
    Related
    ENSMUSP00000058755.7, OTTMUSP00000020425, ENSMUST00000062829.8
    Conserved Domains (1) summary
    pfam00046
    Location:158210
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    52206365..52208624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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