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Hoxa11os homeobox A11, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 15397, updated on 26-Sep-2022

Summary

Official Symbol
Hoxa11osprovided by MGI
Official Full Name
homeobox A11, opposite strandprovided by MGI
Primary source
MGI:MGI:107208
See related
Ensembl:ENSMUSG00000086427 AllianceGenome:MGI:107208
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hoxa11s; Hoxa11as
Summary
Acts upstream of or within regulation of transcription by RNA polymerase II. Is expressed in several structures, including epidermis; genitourinary system; limb; limb bud; and stomach proventricular region epithelium. Orthologous to human HOXA11-AS (HOXA11 antisense RNA). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in limb E14.5 (RPKM 91.1), colon adult (RPKM 79.9) and 2 other tissues See more
Orthologs
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Genomic context

See Hoxa11os in Genome Data Viewer
Location:
6 B3; 6 25.4 cM
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (52222223..52226749)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (52245243..52249769)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52902 Neighboring gene microRNA 196b Neighboring gene homeobox A10 Neighboring gene homeobox A11 Neighboring gene homeobox A13 Neighboring gene Hoxa distal transcript antisense RNA

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Other Names

  • HOXA11 antisense RNA (non-protein coding)
  • HOXA11 opposite strand RNA (non-protein coding)
  • Hoxa11 opposite strand transcript (non-protein coding)
  • homeo box A11, opposite strand transcript

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015348.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    U20366
    Related
    ENSMUST00000134512.8

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    52222223..52226749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)