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Hnrnpc heterogeneous nuclear ribonucleoprotein C [ Mus musculus (house mouse) ]

Gene ID: 15381, updated on 19-Mar-2023

Summary

Official Symbol
Hnrnpcprovided by MGI
Official Full Name
heterogeneous nuclear ribonucleoprotein Cprovided by MGI
Primary source
MGI:MGI:107795
See related
Ensembl:ENSMUSG00000060373 AllianceGenome:MGI:107795
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hnrpc; Hnrpc1; Hnrpc2; hnRNPC1; hnRNPC2; hnrnp-C; D14Wsu171e
Summary
Enables mRNA binding activity. Predicted to be involved in negative regulation of mRNA modification. Predicted to act upstream of or within RNA splicing and mRNA processing. Located in pronucleus. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and sensory organ. Orthologous to several human genes including HNRNPC (heterogeneous nuclear ribonucleoprotein C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 123.0), CNS E14 (RPKM 61.1) and 23 other tissues See more
Orthologs
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Genomic context

See Hnrnpc in Genome Data Viewer
Location:
14 C2; 14 26.79 cM
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (52310834..52341491, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (52073377..52104039, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 22354 Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene retinitis pigmentosa GTPase regulator interacting protein 1 Neighboring gene MRT4, mRNA turnover 4, homolog pseudogene Neighboring gene SPT16, facilitates chromatin remodeling subunit

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (2)  1 citation
  • Targeted (2) 
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables N6-methyladenosine-containing RNA binding ISO
Inferred from Sequence Orthology
more info
 
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA binding ISO
Inferred from Sequence Orthology
more info
 
enables deaminase binding ISO
Inferred from Sequence Orthology
more info
 
enables enzyme inhibitor activity ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables mRNA binding ISO
Inferred from Sequence Orthology
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables poly(U) RNA binding ISO
Inferred from Sequence Orthology
more info
 
enables protein domain specific binding ISO
Inferred from Sequence Orthology
more info
 
enables ribonucleoprotein complex binding ISO
Inferred from Sequence Orthology
more info
 
enables telomerase RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in 3'-UTR-mediated mRNA stabilization ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of mRNA modification ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of telomere maintenance via telomerase ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in actin cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
part_of catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasmic periphery of the nuclear pore complex ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in pronucleus IDA
Inferred from Direct Assay
more info
PubMed 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 
part_of spliceosomal complex ISO
Inferred from Sequence Orthology
more info
 
part_of telomerase holoenzyme complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
heterogeneous nuclear ribonucleoproteins C1/C2
Names
heterogeneous nuclear ribonucleoprotein C1
heterogeneous nuclear ribonucleoprotein C2
heterogeneous ribonucleoprotein C1/C2
hnRNP C1 / hnRNP C2
hnRNP C1/C2
hnRNP C2
snoRNA MBI-122

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170981.2NP_001164452.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 2

    See identical proteins and their annotated locations for NP_001164452.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses a different splice site in the coding region, compared to variant 1. The resulting protein (isoform 2) is shorter when it is compared to isoform 1. Variants 2, 3 and 13 encode the same isoform (2).
    Source sequence(s)
    AK011336, AK168802, AV165766, BP767634, DV652725
    Consensus CDS
    CCDS88662.1
    UniProtKB/Swiss-Prot
    Q9Z204
    UniProtKB/TrEMBL
    A0A6P7PXN4
    Related
    ENSMUSP00000154757.2, ENSMUST00000227242.2
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  2. NM_001170982.2NP_001164453.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 2

    See identical proteins and their annotated locations for NP_001164453.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon in the 5' UTR and uses a different splice site in the coding region, compared to variant 1. The resulting protein (isoform 2) is shorter when it is compared to isoform 1. Variants 2, 3 and 13 encode the same isoform (2).
    Source sequence(s)
    AK010845, AV165766, BP767634, CK620126, CK793036, CN714625, DV652725
    Consensus CDS
    CCDS88662.1
    UniProtKB/Swiss-Prot
    Q9Z204
    UniProtKB/TrEMBL
    A0A6P7PXN4
    Related
    ENSMUSP00000154737.2, ENSMUST00000227536.2
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  3. NM_001170983.2NP_001164454.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 3

    See identical proteins and their annotated locations for NP_001164454.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses two different splice sites in the coding region, compared to variant 1. The resulting protein (isoform 3) is shorter when it is compared to isoform 1. Variants 4, 14, 15 and 16 encode the same isoform (3).
    Source sequence(s)
    AK166590, AV165766, BP767634, CN714625, DV652725
    Consensus CDS
    CCDS88661.1
    UniProtKB/Swiss-Prot
    Q9Z204
    UniProtKB/TrEMBL
    A0A6P7PV32
    Related
    ENSMUSP00000154166.2, ENSMUST00000228748.2
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  4. NM_001170984.2NP_001164455.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 4

    See identical proteins and their annotated locations for NP_001164455.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses two different splice sites in the coding region, compared to variant 1. The resulting protein (isoform 4) is shorter when it is compared to isoform 1. Variants 5, 17 and 18 encode the same isoform (4).
    Source sequence(s)
    AA797535, AK010845, AV165766, BP767634, CN714625, DV652725
    Consensus CDS
    CCDS88660.1
    UniProtKB/Swiss-Prot
    Q9Z204
    UniProtKB/TrEMBL
    A0A6P5QYU9
    Related
    ENSMUSP00000154238.2, ENSMUST00000227458.2
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  5. NM_001360172.1NP_001347101.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK010845, AV165766, BP767634, CD771522, CN456693, CN714625, EH101141
    Consensus CDS
    CCDS36917.1
    UniProtKB/Swiss-Prot
    Q9CY83
    UniProtKB/TrEMBL
    A0A6P7PXM6, A0A8C6HSR1
    Related
    ENSMUSP00000133052.2, ENSMUST00000164655.2
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  6. NM_001360173.1NP_001347102.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK010845, AV165766, BP767634, BQ443834, BY227292, CF748747, CN456693, CN714625, EH101141
    Consensus CDS
    CCDS36917.1
    UniProtKB/Swiss-Prot
    Q9CY83
    UniProtKB/TrEMBL
    A0A6P7PXM6, A0A8C6HSR1
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  7. NM_001360174.1NP_001347103.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AK166590, AV165766, BP767634, CN714625, DV652725
    Consensus CDS
    CCDS88659.1
    UniProtKB/TrEMBL
    A0A6P7PV27
    Related
    ENSMUSP00000154212.2, ENSMUST00000228198.2
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  8. NM_001360175.1NP_001347104.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AK166590, AV165766, BP767634, CD771522, CN456693, CN714625
    Consensus CDS
    CCDS88659.1
    UniProtKB/TrEMBL
    A0A6P7PV27
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  9. NM_001360176.1NP_001347105.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AA797535, AK010845, AV165766, BP767634, CD806979, CN714625, CX565659, DV652725
    UniProtKB/TrEMBL
    A0A6P7QC57
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  10. NM_001360177.1NP_001347106.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AA797535, AK010845, AV165766, BP767634, CN714625, CX565659, DV652725
    UniProtKB/TrEMBL
    A0A6P7QC57
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  11. NM_001360178.1NP_001347107.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AA797535, AK010845, AV165766, BP767634, CD771522, CN456693, CN714625, CX565659
    UniProtKB/TrEMBL
    A0A6P7QC57
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  12. NM_001360179.1NP_001347108.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK010845, AV165766, BP767634, BQ443834, BY227292, CF748747, CN456693, CN714625, EH101141
    Consensus CDS
    CCDS88662.1
    UniProtKB/TrEMBL
    A0A6P7PXN4
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  13. NM_001360180.1NP_001347109.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK166590, AV165766, BP767634, BY227292, CN714625
    Consensus CDS
    CCDS88661.1
    UniProtKB/TrEMBL
    A0A6P7PV32
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  14. NM_001360181.1NP_001347110.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK166590, AV165766, BP767634, BY227292, CD806979, CN714625
    Consensus CDS
    CCDS88661.1
    UniProtKB/TrEMBL
    A0A6P7PV32
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  15. NM_001360182.1NP_001347111.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK166590, AV165766, BP767634, BQ443834, BY227292, CF748747, CN714625
    Consensus CDS
    CCDS88661.1
    UniProtKB/TrEMBL
    A0A6P7PV32
    Related
    ENSMUSP00000154619.2, ENSMUST00000228232.2
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  16. NM_001360183.1NP_001347112.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AA797535, AK010845, AV165766, BP767634, BQ443834, BY227292, CF748747, CN714625
    Consensus CDS
    CCDS88660.1
    UniProtKB/TrEMBL
    A0A6P5QYU9
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  17. NM_001360184.1NP_001347113.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AA797535, AK010845, AV165766, BP767634, CD771522, CN714625
    Consensus CDS
    CCDS88660.1
    UniProtKB/TrEMBL
    A0A6P5QYU9
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  18. NM_016884.4NP_058580.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform 1

    See identical proteins and their annotated locations for NP_058580.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest protein (isoform 1). Variants 1, 6 and 7 encode the same isoform (1).
    Source sequence(s)
    AF095257, AK011336, AK012633, BB283438, BP767634, DV652725
    Consensus CDS
    CCDS36917.1
    UniProtKB/Swiss-Prot
    Q9CY83, Q9Z204
    UniProtKB/TrEMBL
    A0A6P7PXM6, A0A8C6HSR1
    Related
    ENSMUSP00000107237.5, ENSMUST00000111610.12
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    52310834..52341491 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247653.2XP_030103513.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X5

    UniProtKB/TrEMBL
    A0A6P5QYU9
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  2. XM_036158468.1XP_036014361.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X2

    UniProtKB/TrEMBL
    A0A6P7PV27
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  3. XM_017315853.3XP_017171342.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X3

    UniProtKB/TrEMBL
    A0A6P7QC57
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  4. XM_017315850.3XP_017171339.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X2

    UniProtKB/Swiss-Prot
    Q9Z204
    UniProtKB/TrEMBL
    A0A6P7PV27
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  5. XM_036158470.1XP_036014363.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X5

    UniProtKB/TrEMBL
    A0A6P5QYU9
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  6. XM_017315855.3XP_017171344.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X4

    UniProtKB/Swiss-Prot
    Q9Z204
    UniProtKB/TrEMBL
    A0A6P7PXN4
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  7. XM_006518571.5XP_006518634.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X1

    See identical proteins and their annotated locations for XP_006518634.1

    UniProtKB/Swiss-Prot
    Q9CY83, Q9Z204
    UniProtKB/TrEMBL
    A0A6P7PXM6, A0A8C6HSR1
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  8. XM_036158469.1XP_036014362.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X4

    UniProtKB/TrEMBL
    A0A6P7PXN4
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
  9. XM_036158467.1XP_036014360.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X1

    UniProtKB/Swiss-Prot
    Q9CY83
    UniProtKB/TrEMBL
    A0A6P7PXM6, A0A8C6HSR1
    Conserved Domains (1) summary
    cd12603
    Location:1093
    RRM_hnRNPC; RNA recognition motif (RRM) found in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)