Format

Send to:

Choose Destination

NIPAL1 NIPA like domain containing 1 [ Homo sapiens (human) ]

Gene ID: 152519, updated on 12-Oct-2019

Summary

Official Symbol
NIPAL1provided by HGNC
Official Full Name
NIPA like domain containing 1provided by HGNC
Primary source
HGNC:HGNC:27194
See related
Ensembl:ENSG00000163293
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NPAL1
Expression
Biased expression in esophagus (RPKM 12.5), skin (RPKM 12.2) and 13 other tissues See more
Orthologs

Genomic context

See NIPAL1 in Genome Data Viewer
Location:
4p12
Exon count:
6
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (48016772..48040173)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (48018791..48039084)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927179 Neighboring gene nuclear transcription factor, X-box binding like 1 Neighboring gene uncharacterized LOC101927157 Neighboring gene cyclic nucleotide gated channel subunit alpha 1 Neighboring gene TXK tyrosine kinase Neighboring gene RNA, U6 small nuclear 838, pseudogene Neighboring gene tec protein tyrosine kinase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Pathways from BioSystems

General gene information

Markers

Homology

Clone Names

  • DKFZp686A06115

Gene Ontology Provided by GOA

Function Evidence Code Pubs
magnesium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
magnesium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
magnesium ion transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
magnesium transporter NIPA3
Names
NIPA-like protein 1
non-imprinted in Prader-Willi/Angelman syndrome region protein 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207330.3NP_997213.1  magnesium transporter NIPA3

    See identical proteins and their annotated locations for NP_997213.1

    Status: VALIDATED

    Source sequence(s)
    AC096749, AK023734, AK095299, AL832997, BC067881, CB960388, CR749484, DA730492, DA830885
    Consensus CDS
    CCDS3479.1
    UniProtKB/Swiss-Prot
    Q6NVV3
    Related
    ENSP00000295461.5, ENST00000295461.10
    Conserved Domains (1) summary
    cl23754
    Location:66358
    EamA; EamA-like transporter family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    48016772..48040173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017007784.1XP_016863273.1  magnesium transporter NIPA3 isoform X1

Support Center