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TEX55 testis expressed 55 [ Homo sapiens (human) ]

Gene ID: 152405, updated on 25-Jan-2022

Summary

Official Symbol
TEX55provided by HGNC
Official Full Name
testis expressed 55provided by HGNC
Primary source
HGNC:HGNC:26553
See related
Ensembl:ENSG00000163424 AllianceGenome:HGNC:26553
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TSCPA; C3orf30
Summary
Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Restricted expression toward testis (RPKM 46.8) See more
Orthologs
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Genomic context

See TEX55 in Genome Data Viewer
Location:
3q13.32
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (119146165..119151456)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (118865012..118870303)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily member 11 Neighboring gene IGSF11 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 3599 Neighboring gene uroplakin 1B Neighboring gene B4GALT4 antisense RNA 1 Neighboring gene beta-1,4-galactosyltransferase 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Potential readthrough

Included gene: UPK1B

Homology

Clone Names

  • FLJ32859

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
testis-specific expressed protein 55
Names
Testis-specific conserved, cAMP-dependent type II PK anchoring protein
uncharacterized protein C3orf30

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152539.3NP_689752.2  testis-specific expressed protein 55

    See identical proteins and their annotated locations for NP_689752.2

    Status: VALIDATED

    Source sequence(s)
    AC083800, AK057421, DW009752
    Consensus CDS
    CCDS2984.1
    UniProtKB/Swiss-Prot
    Q96M34
    Related
    ENSP00000295622.1, ENST00000295622.6
    Conserved Domains (1) summary
    PRK12678
    Location:10205
    PRK12678; transcription termination factor Rho; Provisional

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    119146165..119151456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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