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LINC00635 long intergenic non-protein coding RNA 635 [ Homo sapiens (human) ]

Gene ID: 151658, updated on 13-May-2022

Summary

Official Symbol
LINC00635provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 635provided by HGNC
Primary source
HGNC:HGNC:27184
See related
Ensembl:ENSG00000241469 AllianceGenome:HGNC:27184
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 9.2) See more
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Genomic context

See LINC00635 in Genome Data Viewer
Location:
3q13.12
Exon count:
12
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (107841662..107878068, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (110561411..110597815, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (107560509..107596915, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1990 Neighboring gene BBX high mobility group box domain containing Neighboring gene long intergenic non-protein coding RNA 636 Neighboring gene Sharpr-MPRA regulatory region 1116

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015414.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the longer transcript.
    Source sequence(s)
    BC045586, DB527077
    Related
    ENST00000464359.7
  2. NR_024276.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) lacks several alternate exons and an alternate exonic segment compared to variant 2.
    Source sequence(s)
    BC039365
    Related
    ENST00000488852.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    107841662..107878068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    110561411..110597815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)