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EFHB EF-hand domain family member B [ Homo sapiens (human) ]

Gene ID: 151651, updated on 23-Nov-2021

Summary

Official Symbol
EFHBprovided by HGNC
Official Full Name
EF-hand domain family member Bprovided by HGNC
Primary source
HGNC:HGNC:26330
See related
Ensembl:ENSG00000163576
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CFAP21
Expression
Biased expression in testis (RPKM 7.6), lung (RPKM 1.1) and 1 other tissue See more
Orthologs
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Genomic context

See EFHB in Genome Data Viewer
Location:
3p24.3
Exon count:
17
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (19879472..19947514, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (19920964..19988475, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily H member 8 Neighboring gene uncharacterized LOC105376982 Neighboring gene uncharacterized LOC105376984 Neighboring gene Sharpr-MPRA regulatory region 12217 Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 18 Neighboring gene RAB5A, member RAS oncogene family Neighboring gene RNA, U4 small nuclear 85, pseudogene Neighboring gene SAP18 pseudogene 3 Neighboring gene protein phosphatase 2C like domain containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ25200

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables calcium ion sensor activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
EF-hand domain-containing family member B
Names
cilia and flagella associated protein 21

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001330688.2NP_001317617.1  EF-hand domain-containing family member B isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and 5' coding region and initiates translation at an alternate start codon, compared to variant 1. It encodes isoform 2, which has a shorter and distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AC097635, AK122616, BC028198
    Consensus CDS
    CCDS82744.1
    UniProtKB/Swiss-Prot
    Q8N7U6
    Related
    ENSP00000342263.4, ENST00000344838.8
  2. NM_144715.4NP_653316.3  EF-hand domain-containing family member B isoform 1

    See identical proteins and their annotated locations for NP_653316.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC104182, AK097644, BC028198
    Consensus CDS
    CCDS33715.2
    UniProtKB/Swiss-Prot
    Q8N7U6
    Related
    ENSP00000295824.9, ENST00000295824.14
    Conserved Domains (2) summary
    cd00051
    Location:566626
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:566626
    EF-hand_7; EF-hand domain pair

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    19879472..19947514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011533383.3XP_011531685.3  EF-hand domain-containing family member B isoform X3

    Conserved Domains (1) summary
    cd00051
    Location:476536
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
  2. XM_017005743.2XP_016861232.1  EF-hand domain-containing family member B isoform X6

  3. XM_017005745.2XP_016861234.1  EF-hand domain-containing family member B isoform X7

  4. XM_017005744.2XP_016861233.1  EF-hand domain-containing family member B isoform X6

  5. XM_011533382.2XP_011531684.1  EF-hand domain-containing family member B isoform X1

    Conserved Domains (2) summary
    cd00051
    Location:545605
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:545605
    EF-hand_7; EF-hand domain pair
  6. XM_005264889.2XP_005264946.1  EF-hand domain-containing family member B isoform X2

    Conserved Domains (2) summary
    cd00051
    Location:566626
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:566626
    EF-hand_7; EF-hand domain pair
  7. XM_011533385.2XP_011531687.1  EF-hand domain-containing family member B isoform X4

    Conserved Domains (2) summary
    cd00051
    Location:355415
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:355415
    EF-hand_7; EF-hand domain pair
  8. XM_017005742.2XP_016861231.1  EF-hand domain-containing family member B isoform X5

RNA

  1. XR_001740031.2 RNA Sequence

  2. XR_940383.2 RNA Sequence

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