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CCDC140 CCDC140 long non-coding RNA [ Homo sapiens (human) ]

Gene ID: 151278, updated on 11-Jun-2021

Summary

Official Symbol
CCDC140provided by HGNC
Official Full Name
CCDC140 long non-coding RNAprovided by HGNC
Primary source
HGNC:HGNC:26514
See related
Ensembl:ENSG00000163081
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene encodes a protein that appears to be restricted to select higher primate species. This protein contains a C-terminal coiled-coil domain, which is a versatile structural motif consisting of multiple amphipathic alpha-helices that twist around each other to form a supercoil. [provided by RefSeq, Aug 2011]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See CCDC140 in Genome Data Viewer
Location:
2q36.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (222298147..222305217)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (223162866..223169936)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein L23a pseudogene 28 Neighboring gene uncharacterized LOC107985991 Neighboring gene paired box 3 Neighboring gene PAX3 promoter region Neighboring gene cancer/testis associated transcript 75 Neighboring gene sphingosine-1-phosphate phosphatase 2 Neighboring gene Nanog homeobox pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • CCDC140 lncRNA
  • coiled-coil domain containing 140
  • coiled-coil domain-containing protein 140

Clone Names

  • FLJ32447, MGC133159

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021186.1 RefSeqGene

    Range
    5001..12071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_161172.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010980
    Related
    ENST00000647762.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    222298147..222305217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153038.1: Suppressed sequence

    Description
    NM_153038.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
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