U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01107 long intergenic non-protein coding RNA 1107 [ Homo sapiens (human) ]

Gene ID: 151171, updated on 13-May-2022

Summary

Official Symbol
LINC01107provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1107provided by HGNC
Primary source
HGNC:HGNC:49229
See related
Ensembl:ENSG00000225493 AllianceGenome:HGNC:49229
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.1) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC01107 in Genome Data Viewer
Location:
2q37.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (238510690..238555499, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (239000787..239045598, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (239419331..239464140, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986003 Neighboring gene zinc finger protein 256 pseudogene Neighboring gene ankyrin repeat and SOCS box containing 1 Neighboring gene uncharacterized LOC124906130 Neighboring gene uncharacterized LOC105373963 Neighboring gene long intergenic non-protein coding RNA 1937

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037809.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092619
    Related
    ENST00000446979.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    238510690..238555499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    239000787..239045598 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)