Format

Send to:

Choose Destination

LINC00342 long intergenic non-protein coding RNA 342 [ Homo sapiens (human) ]

Gene ID: 150759, updated on 5-Jan-2022

Summary

Official Symbol
LINC00342provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 342provided by HGNC
Primary source
HGNC:HGNC:42470
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00342
Summary
Biomarker of Huntington's disease. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Broad expression in testis (RPKM 5.1), bone marrow (RPKM 3.3) and 23 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC00342 in Genome Data Viewer
Location:
2q11.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (95807052..95826981, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (96472800..96492729, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373492 Neighboring gene glycerol-3-phosphate acyltransferase 2 pseudogene 1 Neighboring gene ankyrin repeat domain 36C Neighboring gene RNA, 7SL, cytoplasmic 210, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103734.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008268

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    95807052..95826981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_175853.2: Suppressed sequence

    Description
    NM_175853.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Support Center