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SILC1 sciatic injury induced lincRNA upregulator of SOX11 [ Homo sapiens (human) ]

Gene ID: 150622, updated on 25-Jan-2022

Summary

Official Symbol
SILC1provided by HGNC
Official Full Name
sciatic injury induced lincRNA upregulator of SOX11provided by HGNC
Primary source
HGNC:HGNC:26403
See related
AllianceGenome:HGNC:26403
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01105
Expression
Restricted expression toward brain (RPKM 5.8) See more
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Genomic context

See SILC1 in Genome Data Viewer
Location:
2p25.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (5932687..5980218)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (6072819..6120350)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268411 Neighboring gene long intergenic non-protein coding RNA 1810 Neighboring gene uncharacterized LOC400940 Neighboring gene microRNA 7158 Neighboring gene uncharacterized LOC105373401

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 1105

Clone Names

  • MGC120893, DKFZp761K2322

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026832.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC073479, AC079770, DA139711

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    5932687..5980218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153011.2: Suppressed sequence

    Description
    NM_153011.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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