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Ifi44l interferon-induced protein 44 like [ Mus musculus (house mouse) ]

Gene ID: 15061, updated on 12-May-2024

Summary

Official Symbol
Ifi44lprovided by MGI
Official Full Name
interferon-induced protein 44 likeprovided by MGI
Primary source
MGI:MGI:95975
See related
Ensembl:ENSMUSG00000039146 AllianceGenome:MGI:95975
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
H28; H-28; H28-1; NS1178
Summary
This gene encodes a minor histocompatibility antigen that is involved in tissue graft rejection and is polymorphic in different mouse strains. The 5' region of this gene, including the translational start codon and the first 293 amino acids, is absent from the C57BL/6J genome. The encoded antigen is not thought to be expressed in C57BL/6J. [provided by RefSeq, Mar 2013]
Annotation information
Annotation category: partial on reference assembly
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Ifi44l in Genome Data Viewer
Location:
3 H3; 3 76.94 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (151464374..151468528, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (151758737..151762891, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 24458 Neighboring gene STARR-seq mESC enhancer starr_09275 Neighboring gene interferon-induced protein 44 Neighboring gene STARR-seq mESC enhancer starr_09276 Neighboring gene prostaglandin F receptor Neighboring gene predicted gene, 31596

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Spontaneous (1) 

General protein information

Preferred Names
interferon-induced protein 44-like
Names
H28c minor histocompatibility antigen 1
histocompatibility 28

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031367.1NP_112735.1  interferon-induced protein 44-like

    See identical proteins and their annotated locations for NP_112735.1

    Status: VALIDATED

    Source sequence(s)
    AF336221
    UniProtKB/Swiss-Prot
    Q8SP46, Q9BDB7
    Related
    ENSMUSP00000044765.6, ENSMUST00000046739.6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    151464374..151468528 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)