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CDPF1 cysteine rich DPF motif domain containing 1 [ Homo sapiens (human) ]

Gene ID: 150383, updated on 21-Dec-2019

Summary

Official Symbol
CDPF1provided by HGNC
Official Full Name
cysteine rich DPF motif domain containing 1provided by HGNC
Primary source
HGNC:HGNC:33710
See related
Ensembl:ENSG00000205643
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C22orf40
Expression
Ubiquitous expression in ovary (RPKM 2.6), spleen (RPKM 2.6) and 25 other tissues See more
Orthologs

Genomic context

See CDPF1 in Genome Data Viewer
Location:
22q13.31
Exon count:
6
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (46244013..46250780, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (46639910..46646193, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene MIRLET7B host gene Neighboring gene microRNA let-7b Neighboring gene uncharacterized LOC105373074 Neighboring gene peroxisome proliferator activated receptor alpha Neighboring gene polycystin family receptor for egg jelly Neighboring gene tetratricopeptide repeat domain 38

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
cysteine-rich DPF motif domain-containing protein 1
Names
UPF0595 protein C22orf40

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207327.5NP_997210.3  cysteine-rich DPF motif domain-containing protein 1

    See identical proteins and their annotated locations for NP_997210.3

    Status: VALIDATED

    Source sequence(s)
    AW085176, BC067871
    Consensus CDS
    CCDS33670.1
    UniProtKB/Swiss-Prot
    Q6NVV7
    Related
    ENSP00000325301.3, ENST00000314567.8
    Conserved Domains (1) summary
    pfam10170
    Location:13106
    C6_DPF; Cysteine-rich domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    46244013..46250780 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011529960.2XP_011528262.1  cysteine-rich DPF motif domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011528262.1

    Conserved Domains (1) summary
    pfam10170
    Location:1375
    C6_DPF; Cysteine-rich domain
  2. XM_011529965.2XP_011528267.1  cysteine-rich DPF motif domain-containing protein 1 isoform X4

    See identical proteins and their annotated locations for XP_011528267.1

    UniProtKB/Swiss-Prot
    Q6NVV7
    Conserved Domains (1) summary
    pfam10170
    Location:13106
    C6_DPF; Cysteine-rich domain
  3. XM_011529963.2XP_011528265.1  cysteine-rich DPF motif domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    pfam10170
    Location:1336
    C6_DPF; Cysteine-rich domain
  4. XM_011529964.2XP_011528266.1  cysteine-rich DPF motif domain-containing protein 1 isoform X3

    Related
    ENSP00000385460.1, ENST00000404744.1
    Conserved Domains (1) summary
    pfam10170
    Location:1336
    C6_DPF; Cysteine-rich domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001008917.1: Suppressed sequence

    Description
    NM_001008917.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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