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C22orf42 chromosome 22 open reading frame 42 [ Homo sapiens (human) ]

Gene ID: 150297, updated on 6-Nov-2022

Summary

Official Symbol
C22orf42provided by HGNC
Official Full Name
chromosome 22 open reading frame 42provided by HGNC
Primary source
HGNC:HGNC:27160
See related
Ensembl:ENSG00000205856 AllianceGenome:HGNC:27160
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
dJ90G24.6
Expression
Restricted expression toward testis (RPKM 3.7) See more
Orthologs
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Genomic context

See C22orf42 in Genome Data Viewer
Location:
22q12.3
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (32149006..32160448, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (32613084..32623381, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (32544993..32555290, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene AP1B1 pseudogene 1 Neighboring gene AP1B1 pseudogene 2 Neighboring gene SLC5A4 antisense RNA 1 Neighboring gene ret finger protein like 2 Neighboring gene solute carrier family 5 member 4 Neighboring gene CPSF1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
uncharacterized protein C22orf42

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001010859.3NP_001010859.1  uncharacterized protein C22orf42

    See identical proteins and their annotated locations for NP_001010859.1

    Status: VALIDATED

    Source sequence(s)
    AL008723, BU072847, CK818305, CR456485
    Consensus CDS
    CCDS33639.1
    UniProtKB/Swiss-Prot
    A4QPH5, Q6IC83
    Related
    ENSP00000371529.3, ENST00000382097.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    32149006..32160448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017028630.3XP_016884119.1  uncharacterized protein C22orf42 isoform X3

  2. XM_011529922.4XP_011528224.1  uncharacterized protein C22orf42 isoform X1

  3. XM_017028629.3XP_016884118.1  uncharacterized protein C22orf42 isoform X2

  4. XM_017028631.2XP_016884120.1  uncharacterized protein C22orf42 isoform X4

  5. XM_017028632.3XP_016884121.1  uncharacterized protein C22orf42 isoform X5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    32613084..32623381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)