H2-Q5 histocompatibility 2, Q region locus 5 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: H2-Q5provided by MGI
Official Full Name: histocompatibility 2, Q region locus 5provided by MGI
Primary source: MGI:MGI:95934
See related: Ensembl:ENSMUSG00000055413 AllianceGenome:MGI:95934
Gene type: pseudo
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Qa5; Qa-5; H-2Q5; Qat-5; Gm53175
Summary: Is expressed in several structures, including immune system; liver; and testis. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in spleen adult (RPKM 123.6), mammary gland adult (RPKM 71.0) and 14 other tissues See more
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Genomic context

Location:: 17 B1; 17 18.65 cM

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
109	current	GRCm39 (GCF_000001635.27)	17	NC_000083.7 (35613075..35614606)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	17	NC_000083.6 (35394099..35395630)

Chromosome 17 - NC_000083.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

report a previously unknown homolog of H2-Q5(k) in the C57BL/6 mouse, which encodes Qdm, but is transcribed solely into noncanonical isoforms
Title: Isoforms of the nonclassical class I MHC antigen H2-Q5 are enriched in brain and encode Qdm peptide.

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General gene information

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Markers

H2-D1 (e-PCR), detects polymorphism
- UniSTS:474693

D17Rua9 (e-PCR), detects polymorphism
- UniSTS:142166

BE136769 (e-PCR)
- UniSTS:209301

D17Mit28 (e-PCR), detects polymorphism
- UniSTS:116649

H2-Q5 (e-PCR), detects polymorphism
- UniSTS:525234

H2-D1 (e-PCR), detects polymorphism
- UniSTS:143300

H2-D (e-PCR)
- UniSTS:143301

H2-Q4 (e-PCR), detects polymorphism
- UniSTS:143309

Other Names

histocompatibility 2, Q region locus 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.