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LINC00479 long intergenic non-protein coding RNA 479 [ Homo sapiens (human) ]

Gene ID: 150135, updated on 13-May-2022

Summary

Official Symbol
LINC00479provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 479provided by HGNC
Primary source
HGNC:HGNC:19727
See related
Ensembl:ENSG00000236384 AllianceGenome:HGNC:19727
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRED76; C21orf129
Expression
Biased expression in small intestine (RPKM 1.9), duodenum (RPKM 0.9) and 3 other tissues See more
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Genomic context

See LINC00479 in Genome Data Viewer
Location:
21q22.3
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (41711520..41715775, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (40101706..40105961, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (43131680..43135935, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372813 Neighboring gene long intergenic non-protein coding RNA 111 Neighboring gene long intergenic non-protein coding RNA 112 Neighboring gene receptor interacting serine/threonine kinase 4 Neighboring gene microRNA 6814

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027272.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001615
    Related
    ENST00000412102.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    41711520..41715775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    40101706..40105961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152506.1: Suppressed sequence

    Description
    NM_152506.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.