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CTNND1 catenin delta 1 [ Homo sapiens (human) ]

Gene ID: 1500, updated on 6-Oct-2024

Summary

Official Symbol
CTNND1provided by HGNC
Official Full Name
catenin delta 1provided by HGNC
Primary source
HGNC:HGNC:2515
See related
Ensembl:ENSG00000198561 MIM:601045; AllianceGenome:HGNC:2515
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CAS; p120; BCDS2; CTNND; P120CAS; P120CTN; p120(CAS); p120(CTN)
Summary
This gene encodes a member of the Armadillo protein family, which function in adhesion between cells and signal transduction. Multiple translation initiation codons and alternative splicing result in many different isoforms being translated. Not all of the full-length natures of the described transcript variants have been determined. Read-through transcription also exists between this gene and the neighboring upstream thioredoxin-related transmembrane protein 2 (TMX2) gene. [provided by RefSeq, Dec 2010]
Expression
Ubiquitous expression in esophagus (RPKM 79.1), skin (RPKM 62.3) and 24 other tissues See more
Orthologs
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Genomic context

See CTNND1 in Genome Data Viewer
Location:
11q12.1
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (57761802..57819540)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (57712138..57769885)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (57529274..57587012)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene TMX2-CTNND1 readthrough (NMD candidate) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:57492459-57492960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:57492961-57493460 Neighboring gene peptidylprolyl isomerase A pseudogene 42 Neighboring gene thioredoxin related transmembrane protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4729 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4730 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4731 Neighboring gene selenoprotein H Neighboring gene BTB domain containing 18 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:57546031-57546233 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:57546189-57547075 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:57547076-57547961 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:57551728-57552228 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4732 Neighboring gene Sharpr-MPRA regulatory region 6223 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4733 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:57635672-57636196 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:57636197-57636722 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene olfactory receptor family 5 subfamily BA member 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Blepharocheilodontic syndrome 2
MedGen: C4540127 OMIM: 617681 GeneReviews: Not available
Compare labs

EBI GWAS Catalog

Description
Biological insights from 108 schizophrenia-associated genetic loci.
EBI GWAS Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough TMX2-CTNND1

Readthrough gene: TMX2-CTNND1, Included gene: TMX2

Clone Names

  • KIAA0384

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables beta-catenin binding IEA
Inferred from Electronic Annotation
more info
 
enables cadherin binding HDA PubMed 
enables cadherin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables cadherin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables cadherin binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein sequestering activity IDA
Inferred from Direct Assay
more info
PubMed 
enables protein tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in Schaffer collateral - CA1 synapse IEA
Inferred from Electronic Annotation
more info
 
is_active_in adherens junction IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in adherens junction ISS
Inferred from Sequence or Structural Similarity
more info
 
part_of catenin complex IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell-cell junction IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol IMP
Inferred from Mutant Phenotype
more info
PubMed 
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular exosome HDA PubMed 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 
located_in growth cone IEA
Inferred from Electronic Annotation
more info
 
located_in hippocampal mossy fiber to CA3 synapse IEA
Inferred from Electronic Annotation
more info
 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 
located_in midbody IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IMP
Inferred from Mutant Phenotype
more info
PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
 
located_in postsynaptic density, intracellular component IEA
Inferred from Electronic Annotation
more info
 
located_in presynaptic active zone cytoplasmic component IEA
Inferred from Electronic Annotation
more info
 
located_in zonula adherens IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
catenin delta-1
Names
cadherin-associated Src substrate
catenin (cadherin-associated protein), delta 1
p120 catenin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029078.2 RefSeqGene

    Range
    5002..62740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001085458.2NP_001078927.1  catenin delta-1 isoform 1ABC

    See identical proteins and their annotated locations for NP_001078927.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) is the longest variant and it encodes the longest protein (isoform 1ABC). This variant has also been called hp120ctn-1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44604.1
    UniProtKB/Swiss-Prot
    A8K939, O15088, O60713, O60714, O60715, O60716, O60935, Q6DHZ7, Q6RBX8, Q9UP71, Q9UP72, Q9UP73
    UniProtKB/TrEMBL
    C9JZR2, E9PN49
    Related
    ENSP00000382004.5, ENST00000399050.10
    Conserved Domains (2) summary
    cd00020
    Location:363481
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:368393
    ARM; armadillo repeat [structural motif]
  2. NM_001085459.2NP_001078928.1  catenin delta-1 isoform 1AB

    See identical proteins and their annotated locations for NP_001078928.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame segment in the coding region, compared to variant 1. The resulting protein (isoform 1AB) is shorter than isoform 1ABC. This variant is also called hp120ctn-1AB.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44605.1
    UniProtKB/TrEMBL
    C9JZR2, E9PN49
    Related
    ENSP00000354823.4, ENST00000361332.8
    Conserved Domains (2) summary
    cd00020
    Location:363481
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:368393
    ARM; armadillo repeat [structural motif]
  3. NM_001085460.2NP_001078929.1  catenin delta-1 isoform 1A

    See identical proteins and their annotated locations for NP_001078929.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) uses a different splice site in the 5' UTR and lacks two alternate in-frame segments in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-1A with variants 5 and 6. Variants 4, 5, and 6 encode the same protein (isoform 1A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44606.1
    UniProtKB/TrEMBL
    C9JZR2, E9PN49
    Related
    ENSP00000351527.6, ENST00000358694.10
    Conserved Domains (2) summary
    cd00020
    Location:363481
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:368393
    ARM; armadillo repeat [structural motif]
  4. NM_001085461.2NP_001078930.1  catenin delta-1 isoform 1A

    See identical proteins and their annotated locations for NP_001078930.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) lacks two alternate in-frame segments in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-1A with variants 4 and 6. Variants 4, 5, and 6 encode the same protein (isoform 1A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44606.1
    UniProtKB/TrEMBL
    C9JZR2, E9PN49
    Related
    ENSP00000500962.1, ENST00000673683.1
    Conserved Domains (2) summary
    cd00020
    Location:363481
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:368393
    ARM; armadillo repeat [structural motif]
  5. NM_001085462.2NP_001078931.1  catenin delta-1 isoform 1A

    See identical proteins and their annotated locations for NP_001078931.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) uses a different splice site in the 5' UTR, lacks an alternate segment in the 5' UTR, and lacks two alternate in-frame segments in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-1A with variants 4 and 5. Variants 4, 5, and 6 encode the same protein (isoform 1A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44606.1
    UniProtKB/TrEMBL
    C9JZR2, E9PN49
    Related
    ENSP00000413586.2, ENST00000428599.6
    Conserved Domains (2) summary
    cd00020
    Location:363481
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:368393
    ARM; armadillo repeat [structural motif]
  6. NM_001085463.2NP_001078932.1  catenin delta-1 isoform 3ABC

    See identical proteins and their annotated locations for NP_001078932.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7) has multiple differences and uses a downstream start codon, compared to variant 1. The resulting protein (isoform 3ABC) has a shorter N-terminus, compared to isoform 1ABC. This variant is also called hp120ctn-3ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44608.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000403518.2, ENST00000415361.6
    Conserved Domains (2) summary
    cd00020
    Location:262380
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:267292
    ARM; armadillo repeat [structural motif]
  7. NM_001085464.2NP_001078933.1  catenin delta-1 isoform 3AB

    See identical proteins and their annotated locations for NP_001078933.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8) has multiple differences and uses a downstream start codon, compared to variant 1. The resulting protein (isoform 3AB) has a shorter N-terminus, compared to isoform 1ABC. This variant is also called hp120ctn-3AB.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS53633.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000437327.1, ENST00000530094.5
    Conserved Domains (2) summary
    cd00020
    Location:262380
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:267292
    ARM; armadillo repeat [structural motif]
  8. NM_001085465.2NP_001078934.1  catenin delta-1 isoform 3B

    See identical proteins and their annotated locations for NP_001078934.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9) has multiple differences and uses a downstream start codon, compared to variant 1. The resulting protein (isoform 3B) is shorter when it is compared to isoform 1ABC. This variant is also called hp120ctn-3B.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS53634.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000434949.1, ENST00000532787.5
    Conserved Domains (2) summary
    cd00020
    Location:262380
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:267292
    ARM; armadillo repeat [structural motif]
  9. NM_001085466.2NP_001078935.1  catenin delta-1 isoform 3AC

    See identical proteins and their annotated locations for NP_001078935.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (10) has multiple differences, compared to variant 1. The resulting protein (isoform 3AC) is shorter than isoform 1ABC. This variant is also called hp120ctn-3AC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS53632.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000435266.1, ENST00000528232.5
    Conserved Domains (2) summary
    cd00020
    Location:262380
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:267292
    ARM; armadillo repeat [structural motif]
  10. NM_001085467.2NP_001078936.1  catenin delta-1 isoform 3A

    See identical proteins and their annotated locations for NP_001078936.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (11) lacks multiple alternate segments in the 5' UTR and in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-3A with variants 12 and 13. Variants 11, 12, and 13 encode the same protein (isoform 3A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44609.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000409930.2, ENST00000426142.6
    Conserved Domains (2) summary
    cd00020
    Location:262380
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:267292
    ARM; armadillo repeat [structural motif]
  11. NM_001085468.2NP_001078937.1  catenin delta-1 isoform 3A

    See identical proteins and their annotated locations for NP_001078937.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (12) lacks multiple alternate segments in the 5' UTR and in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-3A with variants 11 and 13. Variants 11, 12, and 13 encode the same protein (isoform 3A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44609.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000437156.1, ENST00000529986.5
    Conserved Domains (2) summary
    cd00020
    Location:262380
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:267292
    ARM; armadillo repeat [structural motif]
  12. NM_001085469.2NP_001078938.1  catenin delta-1 isoform 3A

    See identical proteins and their annotated locations for NP_001078938.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (13) lacks multiple alternate segments in the 5' UTR and in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-3A with variants 11 and 12. Variants 11, 12, and 13 encode the same protein (isoform 3A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44609.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000434017.1, ENST00000532245.5
    Conserved Domains (2) summary
    cd00020
    Location:262380
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:267292
    ARM; armadillo repeat [structural motif]
  13. NM_001206883.2NP_001193812.1  catenin delta-1 isoform 2ABC

    See identical proteins and their annotated locations for NP_001193812.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (14) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2ABC) has a shorter N-terminus than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS55763.1
    UniProtKB/TrEMBL
    C9JZR2, E9PN49
    Related
    ENSP00000433276.1, ENST00000532844.5
    Conserved Domains (2) summary
    cd00020
    Location:309427
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:314339
    ARM; armadillo repeat [structural motif]
  14. NM_001206884.2NP_001193813.1  catenin delta-1 isoform 2AC

    See identical proteins and their annotated locations for NP_001193813.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (15) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2AC) is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS55764.1
    UniProtKB/TrEMBL
    C9JZR2, E9PN49
    Related
    ENSP00000436744.1, ENST00000530748.5
    Conserved Domains (2) summary
    cd00020
    Location:309427
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:314339
    ARM; armadillo repeat [structural motif]
  15. NM_001206885.2NP_001193814.1  catenin delta-1 isoform 1AC

    See identical proteins and their annotated locations for NP_001193814.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (16) lacks an in-frame exon in the 3_ coding region, compared to variant 1. This results in a shorter protein (isoform 1AC), compared to isoform 1ABC).
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS73290.1
    UniProtKB/TrEMBL
    C9JZR2, E9PN49
    Related
    ENSP00000354907.5, ENST00000361796.9
    Conserved Domains (2) summary
    cd00020
    Location:363481
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:368393
    ARM; armadillo repeat [structural motif]
  16. NM_001206886.2NP_001193815.1  catenin delta-1 isoform 2AB

    See identical proteins and their annotated locations for NP_001193815.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (17) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2AB) is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS55765.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000433334.1, ENST00000526357.5
    Conserved Domains (2) summary
    cd00020
    Location:309427
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:314339
    ARM; armadillo repeat [structural motif]
  17. NM_001206887.2NP_001193816.1  catenin delta-1 isoform 2B

    See identical proteins and their annotated locations for NP_001193816.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (18) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2B) is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS55767.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000435494.1, ENST00000529873.5
    Conserved Domains (2) summary
    cd00020
    Location:309427
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:314339
    ARM; armadillo repeat [structural motif]
  18. NM_001206888.2NP_001193817.1  catenin delta-1 isoform 2A

    See identical proteins and their annotated locations for NP_001193817.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (19) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2A) is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS55766.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000432243.1, ENST00000528621.5
    Conserved Domains (2) summary
    cd00020
    Location:309427
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:314339
    ARM; armadillo repeat [structural motif]
  19. NM_001206889.2NP_001193818.1  catenin delta-1 isoform 2A

    See identical proteins and their annotated locations for NP_001193818.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (20) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2A) is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS55766.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000435379.1, ENST00000532649.5
    Conserved Domains (2) summary
    cd00020
    Location:309427
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:314339
    ARM; armadillo repeat [structural motif]
  20. NM_001206890.2NP_001193819.1  catenin delta-1 isoform 3A

    See identical proteins and their annotated locations for NP_001193819.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (21) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (3A) is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44609.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000432075.1, ENST00000532463.5
    Conserved Domains (2) summary
    cd00020
    Location:262380
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:267292
    ARM; armadillo repeat [structural motif]
  21. NM_001206891.2NP_001193820.1  catenin delta-1 isoform 2A

    See identical proteins and their annotated locations for NP_001193820.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (22) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2A) is shorter than isoform 1ABC.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS55766.1
    UniProtKB/TrEMBL
    Q96FS1
    Related
    ENSP00000436323.1, ENST00000529526.5
    Conserved Domains (2) summary
    cd00020
    Location:309427
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:314339
    ARM; armadillo repeat [structural motif]
  22. NM_001331.3NP_001322.1  catenin delta-1 isoform 1B

    See identical proteins and their annotated locations for NP_001322.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks two alternate in-frame segments in the coding region, compared to variant 1. The encoded protein (isoform 1B) is shorter than isoform 1ABC. Another name for this variant is hp120ctn-1B.
    Source sequence(s)
    AP001931
    Consensus CDS
    CCDS44607.1
    UniProtKB/TrEMBL
    A0A669KB62
    Related
    ENSP00000354785.6, ENST00000361391.10
    Conserved Domains (2) summary
    cd00020
    Location:363481
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:368393
    ARM; armadillo repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    57761802..57819540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    57712138..57769885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)