Format

Send to:

Choose Destination

PRNT prion locus lncRNA, testis expressed [ Homo sapiens (human) ]

Gene ID: 149830, updated on 23-Nov-2021

Summary

Official Symbol
PRNTprovided by HGNC
Official Full Name
prion locus lncRNA, testis expressedprovided by HGNC
Primary source
HGNC:HGNC:18046
See related
Ensembl:ENSG00000180259
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
M8
Expression
Restricted expression toward testis (RPKM 3.5) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See PRNT in Genome Data Viewer
Location:
20p13
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (4731282..4740668, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (4711928..4721314, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene prion protein Neighboring gene prion like protein doppel Neighboring gene IDI1 pseudogene 3 Neighboring gene uncharacterized LOC105372511 Neighboring gene Ras association domain family member 2 Neighboring gene uncharacterized LOC107985392

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • prion protein (testis specific)

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024267.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AJ427540, AL133396
    Related
    ENST00000326539.6
  2. NR_024268.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 5' end, compared to variant 1.
    Source sequence(s)
    AJ427539, AL133396
    Related
    ENST00000423718.2
  3. NR_024269.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site at the 5' end, compared to variant 1.
    Source sequence(s)
    AL133396, AL137296
    Related
    ENST00000418528.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    4731282..4740668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177549.2: Suppressed sequence

    Description
    NM_177549.2: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Support Center