Format

Send to:

Choose Destination

GTSF1L gametocyte specific factor 1 like [ Homo sapiens (human) ]

Gene ID: 149699, updated on 18-Aug-2020

Summary

Official Symbol
GTSF1Lprovided by HGNC
Official Full Name
gametocyte specific factor 1 likeprovided by HGNC
Primary source
HGNC:HGNC:16198
See related
Ensembl:ENSG00000124196
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM112A; C20orf65; dJ1028D15.4
Expression
Restricted expression toward testis (RPKM 59.3) See more
Orthologs

Genomic context

See GTSF1L in Genome Data Viewer
Location:
20q13.12
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (43726161..43727135, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (42354801..42355647, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L27a pseudogene Neighboring gene MYB proto-oncogene like 2 Neighboring gene uncharacterized LOC101927200 Neighboring gene uncharacterized LOC107985441 Neighboring gene RNA, U6 small nuclear 639, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC50820

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
gametocyte-specific factor 1-like
Names
family with sequence similarity 112, member A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008901.2NP_001008901.1  gametocyte-specific factor 1-like isoform 2

    See identical proteins and their annotated locations for NP_001008901.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame segment in the coding region, as compared to variant 1. The encoded isoform 2 lacks an internal segment, as compared to isoform 1.
    Source sequence(s)
    AA813527, BQ428678
    Consensus CDS
    CCDS33471.1
    UniProtKB/Swiss-Prot
    Q9H1H1
    Related
    ENSP00000362096.2, ENST00000373005.2
    Conserved Domains (1) summary
    pfam05253
    Location:830
    zf-U11-48K; U11-48K-like CHHC zinc finger
  2. NM_176791.4NP_789761.1  gametocyte-specific factor 1-like isoform 1

    See identical proteins and their annotated locations for NP_789761.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BC040049, BQ428678, BX355734
    Consensus CDS
    CCDS13323.1
    UniProtKB/Swiss-Prot
    Q9H1H1
    Related
    ENSP00000362094.1, ENST00000373003.2
    Conserved Domains (1) summary
    pfam05253
    Location:830
    zf-U11-48K; U11-48K-like CHHC zinc finger

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    43726161..43727135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005260298.4XP_005260355.1  gametocyte-specific factor 1-like isoform X1

    Conserved Domains (1) summary
    pfam05253
    Location:830
    zf-U11-48K; U11-48K-like CHHC zinc finger
Support Center