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LRRC71 leucine rich repeat containing 71 [ Homo sapiens (human) ]

Gene ID: 149499, updated on 7-Aug-2022

Summary

Official Symbol
LRRC71provided by HGNC
Official Full Name
leucine rich repeat containing 71provided by HGNC
Primary source
HGNC:HGNC:26556
See related
Ensembl:ENSG00000160838 AllianceGenome:HGNC:26556
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf92
Expression
Restricted expression toward testis (RPKM 8.7) See more
Orthologs
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Genomic context

See LRRC71 in Genome Data Viewer
Location:
1q23.1
Exon count:
18
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (156920632..156941073)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (156057478..156069935)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (156890424..156902886)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene neurotrophic receptor tyrosine kinase 1 Neighboring gene Sharpr-MPRA regulatory region 5756 Neighboring gene insulin receptor related receptor Neighboring gene platelet endothelial aggregation receptor 1 Neighboring gene Rho guanine nucleotide exchange factor 11 Neighboring gene microRNA 765 Neighboring gene RNA, 7SL, cytoplasmic 612, pseudogene Neighboring gene uncharacterized LOC102724222

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ32884, FLJ77598, MGC45468

General protein information

Preferred Names
leucine-rich repeat-containing protein 71
Names
leucine-rich repeat-containing protein C10orf92

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144702.3NP_653303.2  leucine-rich repeat-containing protein 71

    See identical proteins and their annotated locations for NP_653303.2

    Status: VALIDATED

    Source sequence(s)
    AK292342, AL356104, BC033790, BU689904
    Consensus CDS
    CCDS44249.1
    UniProtKB/Swiss-Prot
    Q8N4P6, Q96M24
    UniProtKB/TrEMBL
    A8K8H7
    Related
    ENSP00000336661.7, ENST00000337428.8
    Conserved Domains (2) summary
    cd00116
    Location:161308
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:168196
    LRR_RI; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    156920632..156941073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017000459.3XP_016855948.1  leucine-rich repeat-containing protein 71 isoform X7

  2. XM_047447397.1XP_047303353.1  leucine-rich repeat-containing protein 71 isoform X2

  3. XM_006711185.4XP_006711248.1  leucine-rich repeat-containing protein 71 isoform X2

    See identical proteins and their annotated locations for XP_006711248.1

    Related
    ENST00000490146.5
    Conserved Domains (2) summary
    cd00116
    Location:134281
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:141169
    LRR_RI; leucine-rich repeat [structural motif]
  4. XM_005244926.4XP_005244983.1  leucine-rich repeat-containing protein 71 isoform X1

    Conserved Domains (2) summary
    cd00116
    Location:161308
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:168196
    LRR_RI; leucine-rich repeat [structural motif]
  5. XM_006711186.4XP_006711249.1  leucine-rich repeat-containing protein 71 isoform X3

    Conserved Domains (2) summary
    cd00116
    Location:161308
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:168196
    LRR_RI; leucine-rich repeat [structural motif]
  6. XM_006711187.4XP_006711250.1  leucine-rich repeat-containing protein 71 isoform X4

    Conserved Domains (2) summary
    cd00116
    Location:161308
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:168196
    LRR_RI; leucine-rich repeat [structural motif]
  7. XM_005244927.4XP_005244984.1  leucine-rich repeat-containing protein 71 isoform X5

    Conserved Domains (2) summary
    cd00116
    Location:161308
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:168196
    LRR_RI; leucine-rich repeat [structural motif]
  8. XM_005244928.3XP_005244985.1  leucine-rich repeat-containing protein 71 isoform X6

    Conserved Domains (2) summary
    cd00116
    Location:161308
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:168196
    LRR_RI; leucine-rich repeat [structural motif]
  9. XM_047447415.1XP_047303371.1  leucine-rich repeat-containing protein 71 isoform X9

  10. XM_011509241.3XP_011507543.1  leucine-rich repeat-containing protein 71 isoform X11

    Conserved Domains (2) summary
    cd00116
    Location:161308
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:168196
    LRR_RI; leucine-rich repeat [structural motif]
  11. XM_017000462.3XP_016855951.1  leucine-rich repeat-containing protein 71 isoform X10

    Conserved Domains (2) summary
    cd00116
    Location:993
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:934
    LRR_1; leucine-rich repeat [structural motif]
  12. XM_011509239.3XP_011507541.1  leucine-rich repeat-containing protein 71 isoform X8

    Conserved Domains (2) summary
    cd00116
    Location:9122
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:1131
    LRR_RI; leucine-rich repeat [structural motif]
  13. XM_047447420.1XP_047303376.1  leucine-rich repeat-containing protein 71 isoform X12

  14. XM_047447421.1XP_047303377.1  leucine-rich repeat-containing protein 71 isoform X13

  15. XM_011509240.4XP_011507542.1  leucine-rich repeat-containing protein 71 isoform X10

    See identical proteins and their annotated locations for XP_011507542.1

    Conserved Domains (2) summary
    cd00116
    Location:993
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:934
    LRR_1; leucine-rich repeat [structural motif]

RNA

  1. XR_241072.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    156057478..156069935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)