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C1orf210 chromosome 1 open reading frame 210 [ Homo sapiens (human) ]

Gene ID: 149466, updated on 22-Sep-2022

Summary

Official Symbol
C1orf210provided by HGNC
Official Full Name
chromosome 1 open reading frame 210provided by HGNC
Primary source
HGNC:HGNC:28755
See related
Ensembl:ENSG00000253313 AllianceGenome:HGNC:28755
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TEMP
Summary
Predicted to be located in early endosome; plasma membrane; and recycling endosome. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in duodenum (RPKM 14.2), small intestine (RPKM 12.7) and 15 other tissues See more
Orthologs
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Genomic context

See C1orf210 in Genome Data Viewer
Location:
1p34.2
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (43281877..43285857, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (43152383..43156088, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (43747548..43751252, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378685 Neighboring gene cilia and flagella associated protein 57 Neighboring gene uncharacterized LOC124904164 Neighboring gene transmembrane protein 125 Neighboring gene tyrosine kinase with immunoglobulin like and EGF like domains 1 Neighboring gene MPL proto-oncogene, thrombopoietin receptor

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC52423

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
type III endosome membrane protein TEMP

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164829.2NP_001158301.1  type III endosome membrane protein TEMP

    See identical proteins and their annotated locations for NP_001158301.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC093420, AL696898, BC041633
    Consensus CDS
    CCDS481.1
    UniProtKB/Swiss-Prot
    D3DPX2, Q8IVY1
    Related
    ENSP00000429399.1, ENST00000423420.1
    Conserved Domains (1) summary
    pfam15176
    Location:2197
    LRR19-TM; Leucine-rich repeat family 19 TM domain
  2. NM_182517.3NP_872323.1  type III endosome membrane protein TEMP

    See identical proteins and their annotated locations for NP_872323.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC093420, BC041633, BM273035, BM784450
    Consensus CDS
    CCDS481.1
    UniProtKB/Swiss-Prot
    D3DPX2, Q8IVY1
    Related
    ENSP00000430918.1, ENST00000523677.6
    Conserved Domains (1) summary
    pfam15176
    Location:2197
    LRR19-TM; Leucine-rich repeat family 19 TM domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    43281877..43285857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011540802.3XP_011539104.1  type III endosome membrane protein TEMP isoform X1

    See identical proteins and their annotated locations for XP_011539104.1

    UniProtKB/Swiss-Prot
    D3DPX2, Q8IVY1
    Conserved Domains (1) summary
    pfam15176
    Location:2197
    LRR19-TM; Leucine-rich repeat family 19 TM domain

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    43152383..43156088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)