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LDC1P leucine decarboxylase 1, pseudogene [ Homo sapiens (human) ]

Gene ID: 149086, updated on 29-Mar-2023

Summary

Official Symbol
LDC1Pprovided by HGNC
Official Full Name
leucine decarboxylase 1, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:49677
See related
Ensembl:ENSG00000260386 AllianceGenome:HGNC:49677
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01225
Expression
Low expression observed in reference dataset See more
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Genomic context

See LDC1P in Genome Data Viewer
Location:
1p35.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (31500085..31508566)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (31357785..31366266)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (31971836..31974167)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 46 Neighboring gene RNA, U6 small nuclear 40, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:31972634-31973833 Neighboring gene long intergenic non-protein coding RNA 1226 Neighboring gene uncharacterized LOC124903917 Neighboring gene Sharpr-MPRA regulatory region 14090

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • LINC01225 pseudogene
  • long intergenic non-protein coding RNA 1225
  • ornithine decarboxylase pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034112.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC209007
    Related
    ENST00000562339.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    31500085..31508566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    31357785..31366266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)