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S spike glycoprotein [ SARS coronavirus Tor2 ]

Gene ID: 1489668, updated on 3-Mar-2024

Summary

Gene symbol
S
Gene description
spike glycoprotein
Locus tag
sars2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
SARS coronavirus Tor2 (isolate: Tor2, nat-host: Homo sapiens; patient #2 with severe acute respiratory syndrome (SARS))
Lineage
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus
Also known as
E2
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Genomic context

Sequence:
NC_004718.3 (21492..25259)

NC_004718.3Genomic Context describing neighboring genes Neighboring gene ORF1a polyprotein;ORF1ab polyprotein Neighboring gene ORF3a protein Neighboring gene ORF3b protein Neighboring gene small envelope protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004718.3 Reference assembly

    Range
    21492..25259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009825051.1 spike glycoprotein [SARS coronavirus Tor2]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P59594, Q6QU82, Q7T696, Q7TA19, Q7TFA2, Q7TFB1, Q80BV6
    UniProtKB/TrEMBL
    A0A3G5BJ39, A7J8L4, D2E1D2, D2E1E7, D3KDQ3, Q202E9, Q309G9, Q3S2D2, Q6JH38, Q6RCW5, Q6RCX6, Q6RCZ8, Q6RD09, Q6RD42, Q6RD53, Q6V585, Q6VA89, Q6WGP3
    Conserved Domains (4) summary
    cd21481
    Location:306527
    SARS-CoV_Spike_S1_RBD; receptor-binding domain of the S1 subunit of severe acute respiratory syndrome-related coronavirus Spike (S) protein
    cd21624
    Location:17291
    SARS-CoV-like_Spike_S1_NTD; N-terminal domain of the S1 subunit of the Spike (S) protein from Severe acute respiratory syndrome coronavirus and related betacoronaviruses in the B lineage
    pfam19214
    Location:12151255
    CoV_S2_C; Coronavirus spike glycoprotein S2, intravirion
    cd22378
    Location:5291190
    SARS-CoV-like_Spike_SD1-2_S1-S2_S2; SD-1 and SD-2 subdomains, the S1/S2 cleavage region, and the S2 fusion subunit of the spike (S) glycoprotein from SARS-CoV-2 (COVID-19) and related betacoronaviruses in the B lineage