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ZNF436-AS1 ZNF436 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 148898, updated on 1-Jun-2020

Summary

Official Symbol
ZNF436-AS1provided by HGNC
Official Full Name
ZNF436 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:25122
See related
Ensembl:ENSG00000249087
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf213
Expression
Broad expression in fat (RPKM 9.0), ovary (RPKM 3.7) and 22 other tissues See more

Genomic context

See ZNF436-AS1 in Genome Data Viewer
Location:
1p36.12
Exon count:
1
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (23368971..23371839)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (23695464..23698332)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein R Neighboring gene MIR1 retrotransposon enhancer-blocking element Neighboring gene zinc finger protein 436 Neighboring gene transcription elongation factor A3 Neighboring gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033690.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer, intronless transcript.
    Source sequence(s)
    AL109936, BC007899, BC054115
    Related
    ENST00000335648.3
  2. NR_033691.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the shorter transcript, which is spliced compared to variant 1.
    Source sequence(s)
    BC007899, BX098506
    Related
    ENST00000437367.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    23368971..23371839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_014040926.1 Reference GRCh38.p13 PATCHES

    Range
    138950..141818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001008896.1: Suppressed sequence

    Description
    NM_001008896.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
  2. NM_138479.2: Suppressed sequence

    Description
    NM_138479.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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