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OVAAL ovarian adenocarcinoma amplified long non-coding RNA [ Homo sapiens (human) ]

Gene ID: 148756, updated on 11-Jun-2021

Summary

Official Symbol
OVAALprovided by HGNC
Official Full Name
ovarian adenocarcinoma amplified long non-coding RNAprovided by HGNC
Primary source
HGNC:HGNC:49422
See related
Ensembl:ENSG00000236719
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OVAL; LINC01131
Expression
Restricted expression toward heart (RPKM 1.1) See more
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Genomic context

See OVAAL in Genome Data Viewer
Location:
1q25.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (180558974..180566518)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (180528110..180535654)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene acyl-CoA binding domain containing 6 Neighboring gene voltage dependent anion channel 1 pseudogene 4 Neighboring gene microRNA 3121 Neighboring gene CRISPRi-validated cis-regulatory element chr1.10130 Neighboring gene xenotropic and polytropic retrovirus receptor 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • long intergenic non-protein coding RNA 1131
  • ovarian adenocarcinoma amplified lncRNA

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables pre-mRNA branch point binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA branch site recognition IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125716.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC063624, BC107121
    Related
    ENST00000442621.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    180558974..180566518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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