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SLC35F3 solute carrier family 35 member F3 [ Homo sapiens (human) ]

Gene ID: 148641, updated on 18-Aug-2020

Summary

Official Symbol
SLC35F3provided by HGNC
Official Full Name
solute carrier family 35 member F3provided by HGNC
Primary source
HGNC:HGNC:23616
See related
Ensembl:ENSG00000183780
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 3.2), adrenal (RPKM 0.5) and 8 other tissues See more
Orthologs

Genomic context

See SLC35F3 in Genome Data Viewer
Location:
1q42.2
Exon count:
9
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (233904676..234324511)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (234040679..234460262)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene microRNA 4427 Neighboring gene potassium two pore domain channel subfamily K member 1 Neighboring gene uncharacterized LOC107985362 Neighboring gene uncharacterized LOC107985363 Neighboring gene Rac family small GTPase 1 pseudogene 7 Neighboring gene uncharacterized LOC105373206 Neighboring gene SLC35F3 antisense RNA 1 Neighboring gene ribosomal protein L9 pseudogene 10 Neighboring gene microRNA 4671 Neighboring gene ribosomal protein S15 pseudogene 2 Neighboring gene COA6 antisense RNA 1 Neighboring gene cytochrome c oxidase assembly factor 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Clone Names

  • FLJ37712

Gene Ontology Provided by GOA

Process Evidence Code Pubs
thiamine transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
thiamine transport IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
putative thiamine transporter SLC35F3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001300845.2NP_001287774.1  putative thiamine transporter SLC35F3 isoform 2

    See identical proteins and their annotated locations for NP_001287774.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
    Source sequence(s)
    AK095031, BC037878, DB468252
    Consensus CDS
    CCDS73050.1
    UniProtKB/Swiss-Prot
    Q8IY50
    Related
    ENSP00000355576.3, ENST00000366617.3
    Conserved Domains (2) summary
    pfam00892
    Location:67223
    EamA; EamA-like transporter family
    pfam06027
    Location:165338
    SLC35F; Solute carrier family 35
  2. NM_173508.4NP_775779.1  putative thiamine transporter SLC35F3 isoform 1

    See identical proteins and their annotated locations for NP_775779.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK095031, AL713868
    Consensus CDS
    CCDS1600.1
    UniProtKB/Swiss-Prot
    Q8IY50
    Related
    ENSP00000355577.3, ENST00000366618.8
    Conserved Domains (2) summary
    pfam00892
    Location:136292
    EamA; EamA-like transporter family
    pfam06027
    Location:234407
    SLC35F; Solute carrier family 35

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    233904676..234324511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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