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TTC9B tetratricopeptide repeat domain 9B [ Homo sapiens (human) ]

Gene ID: 148014, updated on 3-Oct-2020

Summary

Official Symbol
TTC9Bprovided by HGNC
Official Full Name
tetratricopeptide repeat domain 9Bprovided by HGNC
Primary source
HGNC:HGNC:26395
See related
Ensembl:ENSG00000174521
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 12.1) and adrenal (RPKM 0.2) See more
Orthologs

Genomic context

See TTC9B in Genome Data Viewer
Location:
19q13.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (40216058..40218399, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (40721965..40724306, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 96 pseudogene Neighboring gene mitogen-activated protein kinase kinase kinase 10 Neighboring gene cyclin P Neighboring gene AKT serine/threonine kinase 2 Neighboring gene uncharacterized LOC107985289

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ30373, MGC33962

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
tetratricopeptide repeat protein 9B
Names
TPR repeat protein 9B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152479.5NP_689692.2  tetratricopeptide repeat protein 9B

    See identical proteins and their annotated locations for NP_689692.2

    Status: VALIDATED

    Source sequence(s)
    AC118344, AK289550, CA432622
    Consensus CDS
    CCDS12550.1
    UniProtKB/Swiss-Prot
    Q8N6N2
    Related
    ENSP00000311760.6, ENST00000311308.6
    Conserved Domains (2) summary
    TIGR02917
    Location:152220
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:135165
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    40216058..40218399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017026368.2XP_016881857.1  tetratricopeptide repeat protein 9B isoform X1

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