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SCGB1C1 secretoglobin family 1C member 1 [ Homo sapiens (human) ]

Gene ID: 147199, updated on 5-Aug-2022

Summary

Official Symbol
SCGB1C1provided by HGNC
Official Full Name
secretoglobin family 1C member 1provided by HGNC
Primary source
HGNC:HGNC:18394
See related
Ensembl:ENSG00000188076 MIM:610176; AllianceGenome:HGNC:18394
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RYD5
Summary
Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See SCGB1C1 in Genome Data Viewer
Location:
11p15.5
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (188050..194575)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (233767..235264)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (193078..194575)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268070 Neighboring gene RNA, U6 small nuclear 447, pseudogene Neighboring gene uncharacterized LOC101930129 Neighboring gene outer dense fiber of sperm tails 3 Neighboring gene Bet1 golgi vesicular membrane trafficking protein like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
secretoglobin family 1C member 1
Names
ligand binding protein RYD5
secretoglobin RYD5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145651.3NP_663626.2  secretoglobin family 1C member 1 precursor

    See identical proteins and their annotated locations for NP_663626.2

    Status: VALIDATED

    Source sequence(s)
    AC069287, AY026938
    Consensus CDS
    CCDS41581.1
    UniProtKB/Swiss-Prot
    Q14DW0, Q8TD33
    Related
    ENSP00000344545.2, ENST00000342878.3
    Conserved Domains (1) summary
    pfam01099
    Location:2891
    Uteroglobin; Uteroglobin family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    188050..194575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005252804.4XP_005252861.2  secretoglobin family 1C member 1 isoform X1

    Conserved Domains (1) summary
    pfam01099
    Location:71134
    Uteroglobin; Uteroglobin family

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    233767..235264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)