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PCYB_061590 deoxyribose-phosphate aldolase [ Plasmodium cynomolgi strain B ]

Gene ID: 14691898, updated on 5-Sep-2024

Summary

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Gene symbol
PCYB_061590
Gene description
deoxyribose-phosphate aldolase
Locus tag
PCYB_061590
See related
PlasmoDB:PCYB_061590; VEuPathDB:PCYB_061590
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Plasmodium cynomolgi strain B (strain: B)
Lineage
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Plasmodium)
Orthologs
Plasmodium falciparum all
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Genomic context

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See PCYB_061590 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Sequence:
NC_020399.1 (261166..261957)

NC_020399.1Genomic Context describing neighboring genes Neighboring gene endomembrane protein Neighboring gene ATP-dependent RNA helicase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020399.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade. Tachibana S, et al. Nat Genet, 2012 Sep. PMID 22863735, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyribose-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deoxyribonucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
deoxyribose-phosphate aldolase
XP_004221374.1
  • putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_020399.1 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004221326.1 → XP_004221374.1  deoxyribose-phosphate aldolase [Plasmodium cynomolgi strain B]

    See identical proteins and their annotated locations for XP_004221374.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    K6V8E9
    Conserved Domains (1) summary
    cl21457
    Location:9 → 258
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...
Nucleotide Protein
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