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TCAM1P testicular cell adhesion molecule 1, pseudogene [ Homo sapiens (human) ]

Gene ID: 146771, updated on 13-May-2022

Summary

Official Symbol
TCAM1Pprovided by HGNC
Official Full Name
testicular cell adhesion molecule 1, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:30707
See related
Ensembl:ENSG00000240280 MIM:612756; AllianceGenome:HGNC:30707
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCAM1
Summary
This pseudogene is located downstream from the growth hormone locus on chromosome 17. This locus evolved by a series of partial duplications that have disrupted the human gene. A homologous gene in mouse encodes a testis-specific cell adhesion protein that may play a role in germ cell-Sertoli cell interactions. [provided by RefSeq, Apr 2012]
Expression
Restricted expression toward testis (RPKM 8.7) See more
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Genomic context

See TCAM1P in Genome Data Viewer
Location:
17q23.3
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (63857016..63864379)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (64727867..64735201)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (61934376..61941739)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 Neighboring gene Sharpr-MPRA regulatory region 8123 Neighboring gene CRISPRi-validated cis-regulatory element chr17.4273 Neighboring gene chorionic somatomammotropin hormone 2 Neighboring gene growth hormone 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • testicular cell adhesion molecule 1 homolog, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002947.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB026156, AC015651
    Related
    ENST00000478379.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    63857016..63864379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    64727867..64735201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)