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Gja4 gap junction protein, alpha 4 [ Mus musculus (house mouse) ]

Gene ID: 14612, updated on 16-Nov-2021

Summary

Official Symbol
Gja4provided by MGI
Official Full Name
gap junction protein, alpha 4provided by MGI
Primary source
MGI:MGI:95715
See related
Ensembl:ENSMUSG00000050234
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cx37; Cnx37; Cxnh1; Gja-4; AU020209; AW558810
Expression
Broad expression in lung adult (RPKM 80.0), ovary adult (RPKM 28.8) and 16 other tissues See more
Orthologs
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Genomic context

See Gja4 in Genome Data Viewer
Location:
4 D2.2; 4 61.47 cM
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (127205213..127207832, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (127311420..127314039, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (126988665..126991222, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 22221 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene gap junction protein, beta 3 Neighboring gene predicted gene, 40251 Neighboring gene gap junction protein, beta 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables gap junction channel activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within blood vessel development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in calcium ion transport ISO
Inferred from Sequence Orthology
more info
 
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 
involved_in cell-cell signaling IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cell-cell signaling ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
part_of connexin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of connexin complex ISO
Inferred from Sequence Orthology
more info
 
located_in gap junction ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
gap junction alpha-4 protein
Names
connexin h1
connexin-37
gap junction membrane channel protein alpha 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008120.3NP_032146.1  gap junction alpha-4 protein

    See identical proteins and their annotated locations for NP_032146.1

    Status: VALIDATED

    Source sequence(s)
    AK143024, AL626768
    Consensus CDS
    CCDS18667.1
    UniProtKB/Swiss-Prot
    P28235
    UniProtKB/TrEMBL
    Q3UPZ2
    Related
    ENSMUSP00000062320.8, ENSMUST00000053753.8
    Conserved Domains (1) summary
    pfam00029
    Location:3220
    Connexin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    127205213..127207832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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