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LINC00052 long intergenic non-protein coding RNA 52 [ Homo sapiens (human) ]

Gene ID: 145978, updated on 22-Sep-2022

Summary

Official Symbol
LINC00052provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 52provided by HGNC
Primary source
HGNC:HGNC:26455
See related
Ensembl:ENSG00000259527 AllianceGenome:HGNC:26455
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TMEM83; NCRNA00052
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00052 in Genome Data Viewer
Location:
15q25.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (87576929..87579686)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (85331488..85334245)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (88120160..88122917)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370956 Neighboring gene uncharacterized LOC102724465 Neighboring gene RNA, U6 small nuclear 185, pseudogene Neighboring gene uncharacterized LOC124903579 Neighboring gene uncharacterized LOC124903580

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Evidence for shared genetic risk between methamphetamine-induced psychosis and schizophrenia.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • transmembrane protein 83

Clone Names

  • FLJ31461

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026869.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK056023, BC066551
    Related
    ENST00000560153.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    87576929..87579686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    85331488..85334245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152454.1: Suppressed sequence

    Description
    NM_152454.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.