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TCF12-DT TCF12 divergent transcript [ Homo sapiens (human) ]

Gene ID: 145783, updated on 29-Mar-2023

Summary

Official Symbol
TCF12-DTprovided by HGNC
Official Full Name
TCF12 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:27078
See related
Ensembl:ENSG00000285331
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 2.0), brain (RPKM 1.5) and 25 other tissues See more
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Genomic context

See TCF12-DT in Genome Data Viewer
Location:
15q21.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (56886170..56918499, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (54689383..54721762, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (57178368..57210697, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 280D Neighboring gene acyl-CoA binding domain containing 7 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr15:57184049-57184608 Neighboring gene long intergenic non-protein coding RNA 3065 Neighboring gene transcription factor 12 Neighboring gene VISTA enhancer hs357 Neighboring gene VISTA enhancer hs623

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Clone Names

  • FLJ32044

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015419.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010999, AK096657, KF459798
    Related
    ENST00000561122.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    56886170..56918499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    54689383..54721762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)