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Mrps33 mitochondrial ribosomal protein S33 [ Mus musculus (house mouse) ]

Gene ID: 14548, updated on 8-Dec-2022

Summary

Official Symbol
Mrps33provided by MGI
Official Full Name
mitochondrial ribosomal protein S33provided by MGI
Primary source
MGI:MGI:1338046
See related
Ensembl:ENSMUSG00000029918 AllianceGenome:MGI:1338046
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gdap3; PTD003; CGI-139; MRP-S33
Summary
Located in mitochondrion. Is expressed in several structures, including early conceptus; gonad; heart; liver; and lung. Orthologous to human MRPS33 (mitochondrial ribosomal protein S33). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 30.3), CNS E14 (RPKM 30.2) and 24 other tissues See more
Orthologs
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Genomic context

See Mrps33 in Genome Data Viewer
Location:
6 B1; 6
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (39778738..39787870, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (39801804..39810936, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene Braf transforming gene Neighboring gene predicted gene, 34389 Neighboring gene ferritin heavy chain, pseudogene 2 Neighboring gene predicted gene 7554 Neighboring gene aldolase A, fructose-bisphosphate pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC106490

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in mitochondrial translation NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane NAS
Non-traceable Author Statement
more info
PubMed 
part_of mitochondrial small ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
located_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
28S ribosomal protein S33, mitochondrial
Names
S33mt
ganglioside-induced differentiation-associated-protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001010930.1NP_001010930.1  28S ribosomal protein S33, mitochondrial isoform 2

    See identical proteins and their annotated locations for NP_001010930.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks a segment in the coding region, as compared to variant 1. The encoded isoform 2 has a shorter and distinct C-terminus.
    Source sequence(s)
    AI841153, BC028645, BU695761, BY296250
    Consensus CDS
    CCDS39464.1
    UniProtKB/TrEMBL
    Q8R2K5
    Related
    ENSMUSP00000110445.2, ENSMUST00000114797.2
    Conserved Domains (1) summary
    pfam08293
    Location:633
    MRP-S33; Mitochondrial ribosomal subunit S27
  2. NM_010270.2NP_034400.1  28S ribosomal protein S33, mitochondrial isoform 1

    See identical proteins and their annotated locations for NP_034400.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AI841153, AK019000, BU695761, BY296250
    Consensus CDS
    CCDS20026.1
    UniProtKB/Swiss-Prot
    O88743, Q9D2R8
    UniProtKB/TrEMBL
    A0A6P5Q3H0, Q58DZ5
    Related
    ENSMUSP00000031978.9, ENSMUST00000031978.9
    Conserved Domains (1) summary
    pfam08293
    Location:696
    MRP-S33; Mitochondrial ribosomal subunit S27

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    39778738..39787870 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)