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LINC00618 long intergenic non-protein coding RNA 618 [ Homo sapiens (human) ]

Gene ID: 145249, updated on 10-Oct-2023

Summary

Official Symbol
LINC00618provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 618provided by HGNC
Primary source
HGNC:HGNC:20110
See related
AllianceGenome:HGNC:20110
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf63
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00618 in Genome Data Viewer
Location:
14q32.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (96943579..96945394)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (91175405..91177220)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (97409916..97411731)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:97207194-97207694 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6057 Neighboring gene long intergenic non-protein coding RNA 2299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:97221641-97222451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8992 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6058 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:97264045-97264576 Neighboring gene VRK serine/threonine kinase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8993 Neighboring gene MPRA-validated peak2247 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:97455145-97455646 Neighboring gene uncharacterized LOC124903376 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:97491895-97492484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:97492485-97493073 Neighboring gene uncharacterized LOC105370647

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104113.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133168

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    96943579..96945394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    91175405..91177220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)