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yifL putative lipoprotein YifL [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 1450304, updated on 3-Dec-2024

Summary

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Official Symbol
yifL
Official Full Name
putative lipoprotein YifL
Primary source
ECOCYC:G0-10471
Locus tag
b4558
See related
ASAP:ABE-0285079
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3803
Summary
First 19 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG12353].
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Genomic context

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Sequence:
NC_000913.3 (3994522..3994725)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene adenylate cyclase Neighboring gene frataxin CyaY Neighboring gene protein YzcX Neighboring gene diaminopimelate epimerase Neighboring gene DUF484 domain-containing protein YigA Neighboring gene site-specific tyrosine recombinase Neighboring gene 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
  2. Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. Daniels DL, et al. Science, 1992 Aug 7. PMID 1379743
  3. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  4. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
  5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
putative lipoprotein YifL

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3994522..3994725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_588473.1 putative lipoprotein YifL [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for YP_588473.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9ANM9, A0A8S0FG65
    Conserved Domains (1) summary
    COG5567
    Location:1 → 63
    YifL; Predicted small periplasmic lipoprotein YifL (function unknown0 [Function unknown]
Nucleotide Protein
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