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VNG_RS01560 beta-CASP ribonuclease aCPSF1 [ Halobacterium salinarum NRC-1 ]

Gene ID: 1447258, updated on 30-Jan-2018

Summary

Gene symbol
VNG_RS01560
Gene description
beta-CASP ribonuclease aCPSF1
Locus tag
VNG_RS01560
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922, old-name: Halobacterium sp. NRC-1)
Lineage
Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG0401G

Genomic context

Sequence:
NC_002607.1 (307290..309215, complement)

NC_002607.1Genomic Context describing neighboring genes Neighboring gene endonuclease III Neighboring gene hypothetical protein Neighboring gene proline--tRNA ligase Neighboring gene hypothetical protein

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002607.1 Reference assembly

    Range
    307290..309215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010902249.1 Peptide Sequence

    See identical proteins and their annotated locations for WP_010902249.1

    UniProtKB/TrEMBL
    B0R3A0, Q9HS54
    Conserved Domains (5) summary
    smart01027
    Location:423548
    Beta-Casp; Beta-Casp domain
    COG1782
    Location:2641
    COG1782; Predicted metal-dependent RNase, contains metallo-beta-lactamase and KH domains [General function prediction only]
    cd02410
    Location:25169
    archeal_CPSF_KH; The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the ...
    pfam07521
    Location:567610
    RMMBL; RNA-metabolizing metallo-beta-lactamase
    cd16295
    Location:184380
    TTHA0252-CPSF-like_MBL-fold; Thermus thermophilus TTHA0252 and related cleavage and polyadenylation specificity factors; MBL-fold metallo-hydrolase domain
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