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Gas5 growth arrest specific 5 [ Mus musculus (house mouse) ]

Gene ID: 14455, updated on 14-Nov-2024

Summary

Official Symbol
Gas5provided by MGI
Official Full Name
growth arrest specific 5provided by MGI
Primary source
MGI:MGI:95659
See related
Ensembl:ENSMUSG00000053332 AllianceGenome:MGI:95659
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gas-5; Snhg2; Mir5117
Summary
Acts upstream of or within response to bacterium. Is expressed in several structures, including alimentary system; brain; metanephros; respiratory system; and sensory organ. Orthologous to human GAS5 (growth arrest specific 5). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in liver E14 (RPKM 95.8), CNS E11.5 (RPKM 88.1) and 16 other tissues See more
Orthologs
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Genomic context

See Gas5 in Genome Data Viewer
Location:
1 H2.1; 1 69.75 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (160862171..160866109)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (161034601..161038539)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr1:162836371-162836672 Neighboring gene RING CCCH (C3H) domains 1 Neighboring gene serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1 Neighboring gene predicted gene, 57574 Neighboring gene zinc finger and BTB domain containing 37 Neighboring gene STARR-positive B cell enhancer mm9_chr1:162964993-162965294 Neighboring gene predicted gene, 26224 Neighboring gene predicted gene, 22357 Neighboring gene predicted gene, 22489 Neighboring gene predicted gene, 23212 Neighboring gene small nucleolar RNA, C/D box 78 Neighboring gene small nucleolar RNA, C/D box 80 Neighboring gene small nucleolar RNA, C/D box 47 Neighboring gene predicted gene, 25789 Neighboring gene aspartyl-tRNA synthetase 2 (mitochondrial) Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:163000837-163001115 Neighboring gene STARR-positive B cell enhancer ABC_E11097 Neighboring gene centromere protein L

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Clone Names

  • MGC6251

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_153812.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000310961.1
  2. NR_153813.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000310910.1
  3. NR_153814.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000247570.1
  4. NR_153815.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000241235.2
  5. NR_166050.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000310932.1
  6. NR_166051.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000310895.1
  7. NR_166052.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000244699.2
  8. NR_166055.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000242491.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    160862171..160866109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_013525.1: Suppressed sequence

    Description
    NM_013525.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
  2. NR_002840.2: Suppressed sequence

    Description
    NR_002840.2: This RefSeq was removed because it is primarily intronic sequence.