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C10orf82 chromosome 10 open reading frame 82 [ Homo sapiens (human) ]

Gene ID: 143379, updated on 1-Jun-2020

Summary

Official Symbol
C10orf82provided by HGNC
Official Full Name
chromosome 10 open reading frame 82provided by HGNC
Primary source
HGNC:HGNC:28500
See related
Ensembl:ENSG00000165863
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 14.6), ovary (RPKM 2.0) and 1 other tissue See more
Orthologs

Genomic context

See C10orf82 in Genome Data Viewer
Location:
10q25.3
Exon count:
9
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (116662211..116670290, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (118423207..118429765, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene pancreatic lipase related protein 1 Neighboring gene pancreatic lipase related protein 2 (gene/pseudogene) Neighboring gene uncharacterized LOC105378499 Neighboring gene Sharpr-MPRA regulatory region 10762 Neighboring gene heat shock protein family A (Hsp70) member 12A Neighboring gene ribosomal protein L5 pseudogene 27

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of chromosome 10 open reading frame 82 (C10orf82) by siRNA inhibits HIV-1 replication in HeLa P4/R5 cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ40268, MGC33547

General protein information

Preferred Names
uncharacterized protein C10orf82

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001330142.3NP_001317071.1  uncharacterized protein C10orf82 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC016825, BC021737, BX117017, BX537582, HY204705
    Consensus CDS
    CCDS81510.1
    UniProtKB/TrEMBL
    K7EKP3
  2. NM_001350930.2NP_001337859.1  uncharacterized protein C10orf82 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC016825, AI218030, AI797771, BX106852, BX117017, BX537582, HY204705
    Consensus CDS
    CCDS81510.1
  3. NM_001350931.2NP_001337860.1  uncharacterized protein C10orf82 isoform 2

    Status: VALIDATED

    Source sequence(s)
    BC021737, BX117017, BX537582, DB451139, HY204705
    Consensus CDS
    CCDS81510.1
    Related
    ENSP00000465712.1, ENST00000588184.2
  4. NM_144661.4NP_653262.1  uncharacterized protein C10orf82 isoform 1

    See identical proteins and their annotated locations for NP_653262.1

    Status: VALIDATED

    Source sequence(s)
    BC021737
    Consensus CDS
    CCDS7596.1
    UniProtKB/Swiss-Prot
    Q8WW14
    Related
    ENSP00000358212.3, ENST00000369210.7

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    116662211..116670290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011539342.2XP_011537644.1  uncharacterized protein C10orf82 isoform X2

    See identical proteins and their annotated locations for XP_011537644.1

  2. XM_011539341.1XP_011537643.1  uncharacterized protein C10orf82 isoform X2

    See identical proteins and their annotated locations for XP_011537643.1

  3. XM_011539340.3XP_011537642.1  uncharacterized protein C10orf82 isoform X1

  4. XM_024447829.1XP_024303597.1  uncharacterized protein C10orf82 isoform X5

  5. XM_011539343.3XP_011537645.1  uncharacterized protein C10orf82 isoform X3

  6. XM_011539345.3XP_011537647.1  uncharacterized protein C10orf82 isoform X4

    See identical proteins and their annotated locations for XP_011537647.1

  7. XM_011539346.3XP_011537648.1  uncharacterized protein C10orf82 isoform X4

    See identical proteins and their annotated locations for XP_011537648.1

  8. XM_011539344.3XP_011537646.1  uncharacterized protein C10orf82 isoform X4

    See identical proteins and their annotated locations for XP_011537646.1

  9. XM_011539347.3XP_011537649.1  uncharacterized protein C10orf82 isoform X6

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