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Fabp5 fatty acid binding protein 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 140868, updated on 19-Apr-2019

Summary

Official Symbol
Fabp5provided by RGD
Official Full Name
fatty acid binding protein 5provided by RGD
Primary source
RGD:70997
See related
Ensembl:ENSRNOG00000049075
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
DA11; C-FABP; E-FABP
Summary
binds long chain fatty acids [RGD, Feb 2006]
Expression
Biased expression in Lung (RPKM 221.3), Liver (RPKM 161.3) and 9 other tissues See more
Orthologs

Genomic context

See Fabp5 in Genome Data Viewer
Location:
2q23
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (93981662..93985322, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 2 NC_005101.3 (113735156..113738856, complement)

Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546353 Neighboring gene peripheral myelin protein 2 Neighboring gene uncharacterized LOC102546437 Neighboring gene uncharacterized LOC108349978

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
fatty acid binding IDA
Inferred from Direct Assay
more info
PubMed 
fatty acid binding ISO
Inferred from Sequence Orthology
more info
PubMed 
identical protein binding ISO
Inferred from Sequence Orthology
more info
PubMed 
retinoic acid binding ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
cell junction IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
PubMed 
extracellular space ISO
Inferred from Sequence Orthology
more info
PubMed 
extracellular space ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
PubMed 
postsynaptic density ISO
Inferred from Sequence Orthology
more info
PubMed 
postsynaptic density ISS
Inferred from Sequence or Structural Similarity
more info
 
postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
synapse ISO
Inferred from Sequence Orthology
more info
PubMed 
synapse ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
fatty acid-binding protein 5
Names
cutaneous fatty acid-binding protein
epidermal-type fatty acid-binding protein
fatty acid binding protein 5, epidermal
fatty acid-binding protein, epidermal

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145878.1NP_665885.1  fatty acid-binding protein 5

    See identical proteins and their annotated locations for NP_665885.1

    Status: PROVISIONAL

    Source sequence(s)
    U13253
    UniProtKB/Swiss-Prot
    P55053
    Related
    ENSRNOP00000064809.1, ENSRNOT00000075493.2
    Conserved Domains (1) summary
    pfam00061
    Location:9134
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

    Range
    93981662..93985322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000070.1 Alternate Rn_Celera

    Range
    87366175..87369839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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